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4UE7
Asym. Unit
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Asym.Unit (169 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
THROMBIN IN COMPLEX WITH 1-AMIDINOPIPERIDINE
Authors
:
E. Ruehmann, A. Heine, G. Klebe
Date
:
16 Dec 14 (Deposition) - 26 Aug 15 (Release) - 23 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.13
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Hydrolase, Hydrolase Inhibitor Complex, Serine Protease, Blood Coagulation, Blood Clotting, Convertion Of Fibrinogen To Fibrin, Blood Clotting Inhibitor, Thrombin Inhibitor, Glycosylation, Blood
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ruehmann, M. Betz, A. Heine, G. Klebe
Fragments Can Bind Either More Enthalpy Or Entropy-Driven: Crystal Structures And Residual Hydration Pattern Suggest Why.
J. Med. Chem. V. 58 6960 2015
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Hetero Components
(9, 14)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
1c: DIMETHYL SULFOXIDE (DMSc)
2a: 1,2-ETHANEDIOL (EDOa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: IODIDE ION (IODa)
5a: PIPERIDINE-1-CARBOXIMIDAMIDE (MRZa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
8a: PHOSPHATE ION (PO4a)
9a: O-SULFO-L-TYROSINE (TYSa)
View:
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No.
Name
Count
Type
Full Name
1
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
3
Ligand/Ion
GLYCEROL
4
IOD
1
Ligand/Ion
IODIDE ION
5
MRZ
1
Ligand/Ion
PIPERIDINE-1-CARBOXIMIDAMIDE
6
NA
2
Ligand/Ion
SODIUM ION
7
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PO4
1
Ligand/Ion
PHOSPHATE ION
9
TYS
1
Mod. Amino Acid
O-SULFO-L-TYROSINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG H:165 , ASP H:178 , HIS H:230 , HOH H:2277
BINDING SITE FOR RESIDUE GOL H1248
02
AC2
SOFTWARE
ARG H:173 , HOH H:2213 , HOH H:2275
BINDING SITE FOR RESIDUE GOL H1249
03
AC3
SOFTWARE
ARG H:93 , ASN H:95 , PO4 H:1253 , HOH H:2130
BINDING SITE FOR RESIDUE GOL H1250
04
AC4
SOFTWARE
LYS H:169 , THR H:172 , HOH H:2209
BINDING SITE FOR RESIDUE NA H1251
05
AC5
SOFTWARE
ARG H:221A , LYS H:224 , HOH H:2227 , HOH H:2228 , HOH H:2239 , HOH H:2268
BINDING SITE FOR RESIDUE NA H1252
06
AC6
SOFTWARE
ASN H:95 , ASP H:100 , ARG H:101 , ARG H:175 , GOL H:1250 , EDO H:1256 , HOH H:2218 , HOH H:2220 , HOH H:2290
BINDING SITE FOR RESIDUE PO4 H1253
07
AC7
SOFTWARE
LEU H:130 , ARG H:165 , PHE H:181 , HOH H:2198
BINDING SITE FOR RESIDUE DMS H1254
08
AC8
SOFTWARE
HIS H:57 , TYR H:60A , TRP H:60D , HOH H:2066 , HOH H:2068
BINDING SITE FOR RESIDUE DMS H1255
09
AC9
SOFTWARE
ARG H:93 , PO4 H:1253 , HOH H:2291
BINDING SITE FOR RESIDUE EDO H1256
10
BC1
SOFTWARE
PHE H:204A , HOH H:2171
BINDING SITE FOR RESIDUE DMS H1257
11
BC2
SOFTWARE
ASP H:189 , ALA H:190 , CYS H:191 , VAL H:213 , TRP H:215 , GLY H:216 , GLY H:219 , GLY H:226 , HOH H:2292
BINDING SITE FOR RESIDUE MRZ H1258
12
BC3
SOFTWARE
ASN H:60G , HOH H:2076
BINDING SITE FOR MONO-SACCHARIDE NAG H1259 BOUND TO ASN H 60G
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (163 KB)
Header - Biol.Unit 1
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