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4UE6
Biol. Unit 1
Info
Asym.Unit (799 KB)
Biol.Unit 1 (268 KB)
Biol.Unit 2 (269 KB)
Biol.Unit 3 (266 KB)
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(1)
Title
:
STRUCTURE OF METHYLENE BLUE-TREATED ANAEROBICALLY PURIFIED D. FRUCTOSOVORANS NIFE-HYDROGENASE
Authors
:
A. Volbeda, L. Martin, P. -P. Liebgott, J. C. Fontecilla-Camps
Date
:
16 Dec 14 (Deposition) - 25 Mar 15 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: B,R (1x)
Biol. Unit 2: C,S (1x)
Biol. Unit 3: A,Q (1x)
Keywords
:
Oxidoreductase, Ni-Sib State
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Volbeda, L. Martin, P. -P. Liebgott, A. L. De Lacey, J. C. Fontecilla-Camps
[Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation In A Variant With Accrued O2-Tolerance And A Tentative Re-Interpretation Of Ni-Si States.
Metallomics V. 7 710 2015
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
1c: S-HYDROXYCYSTEINE (CSOc)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
3a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
3b: CARBONMONOXIDE-(DICYANO) IRON (FCOb)
3c: CARBONMONOXIDE-(DICYANO) IRON (FCOc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
6a: NICKEL (II) ION (NIa)
6b: NICKEL (II) ION (NIb)
6c: NICKEL (II) ION (NIc)
7a: IRON/SULFUR CLUSTER (SF4a)
7b: IRON/SULFUR CLUSTER (SF4b)
7c: IRON/SULFUR CLUSTER (SF4c)
7d: IRON/SULFUR CLUSTER (SF4d)
7e: IRON/SULFUR CLUSTER (SF4e)
7f: IRON/SULFUR CLUSTER (SF4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
FCO
1
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
4
GOL
4
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
NI
-1
Ligand/Ion
NICKEL (II) ION
7
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(10, 10)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
HIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218
BINDING SITE FOR RESIDUE SF4 B1265
02
AC7
SOFTWARE
ASN B:225 , CYS B:227 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230
BINDING SITE FOR RESIDUE F3S B1266
03
AC8
SOFTWARE
GLU B:16 , CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70
BINDING SITE FOR RESIDUE SF4 B1267
04
BC8
SOFTWARE
CYS R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , SER R:499 , CSO R:543 , CYS R:546 , NI R:1551
BINDING SITE FOR RESIDUE FCO R1550
05
BC9
SOFTWARE
CYS R:72 , CYS R:75 , CSO R:543 , CYS R:546 , FCO R:1550
BINDING SITE FOR RESIDUE NI R1551
06
CC1
SOFTWARE
GLU R:53 , LEU R:495 , HIS R:549 , HOH R:2034 , HOH R:2035 , HOH R:2144
BINDING SITE FOR RESIDUE MG R1553
07
CC2
SOFTWARE
ALA B:55 , ASN R:181 , ALA R:182 , TYR R:183 , LEU R:185 , ARG R:529
BINDING SITE FOR RESIDUE GOL R1561
08
CC3
SOFTWARE
SER R:313 , VAL R:324 , ASN R:326 , LYS R:395 , HOH R:2126
BINDING SITE FOR RESIDUE GOL R1562
09
CC4
SOFTWARE
ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLU R:445 , HOH R:2205
BINDING SITE FOR RESIDUE GOL R1563
10
CC5
SOFTWARE
GLU R:465 , SER R:466 , LYS R:467 , ARG R:484 , ILE R:485
BINDING SITE FOR RESIDUE GOL R1564
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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Show PDB file:
Asym.Unit (799 KB)
Header - Asym.Unit
Biol.Unit 1 (268 KB)
Header - Biol.Unit 1
Biol.Unit 2 (269 KB)
Header - Biol.Unit 2
Biol.Unit 3 (266 KB)
Header - Biol.Unit 3
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