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Getting 'Biological Unit' information from database.
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4UD9
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
THROMBIN IN COMPLEX WITH 5-CHLOROTHIOPHENE-2-CARBOXAMIDE
Authors
:
E. Ruehmann, A. Heine, G. Klebe
Date
:
09 Dec 14 (Deposition) - 26 Aug 15 (Release) - 23 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.12
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Hydrolase, Hydrolase Inhibitor Complex, Serine Protease, Blood Coagulation, Blood Clotting, Convertion Of Fibrinogen To Fibrin, Blood Clotting Inhibitor, Thrombin Inhibitor, Fragment, Glycosylation, Blood
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ruehmann, M. Betz, A. Heine, G. Klebe
Fragments Can Bind Either More Enthalpy Or Entropy-Driven: Crystal Structures And Residual Hydration Pattern Suggest Why.
J. Med. Chem. V. 58 6960 2015
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Hetero Components
(8, 13)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: 5-CHLORO-2-THIOPHENECARBOXAMIDE (FQIa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
7a: PHOSPHATE ION (PO4a)
8a: O-SULFO-L-TYROSINE (TYSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
FQI
1
Ligand/Ion
5-CHLORO-2-THIOPHENECARBOXAMIDE
4
GOL
3
Ligand/Ion
GLYCEROL
5
NA
2
Ligand/Ion
SODIUM ION
6
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
PO4
1
Ligand/Ion
PHOSPHATE ION
8
TYS
1
Mod. Residue
O-SULFO-L-TYROSINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG H:221A , LYS H:224 , HOH H:2202 , HOH H:2203 , HOH H:2212 , HOH H:2235
BINDING SITE FOR RESIDUE NA H1247
02
AC2
SOFTWARE
LYS H:169 , THR H:172 , HOH H:2185
BINDING SITE FOR RESIDUE NA H1248
03
AC3
SOFTWARE
ASN H:95 , ASP H:100 , ARG H:101 , ARG H:175 , HOH H:2108 , HOH H:2109 , HOH H:2124 , HOH H:2195
BINDING SITE FOR RESIDUE PO4 H1249
04
AC4
SOFTWARE
LEU H:130 , ARG H:165 , PHE H:181 , HOH H:2174
BINDING SITE FOR RESIDUE DMS H1250
05
AC5
SOFTWARE
GLU H:127 , PHE H:204A , GOL H:1252
BINDING SITE FOR RESIDUE DMS H1251
06
AC6
SOFTWARE
ASP H:125 , THR H:128 , DMS H:1251 , HOH H:2140 , HOH H:2145
BINDING SITE FOR RESIDUE GOL H1252
07
AC7
SOFTWARE
ARG H:165 , ASP H:178 , HIS H:230 , ARG H:233 , HOH H:2243 , HOH H:2248
BINDING SITE FOR RESIDUE GOL H1253
08
AC8
SOFTWARE
ARG H:101 , ASN H:179 , ARG H:233 , LEU H:234 , HOH H:2107
BINDING SITE FOR RESIDUE GOL H1254
09
AC9
SOFTWARE
ASP H:60E , LYS H:60F , ASN H:60G , PHE H:60H
BINDING SITE FOR RESIDUE EDO H1255
10
BC1
SOFTWARE
ARG H:165 , LYS H:169 , ILE H:176 , THR H:177 , ASP H:178 , HOH H:2197
BINDING SITE FOR RESIDUE EDO H1256
11
BC2
SOFTWARE
ASP H:189 , ALA H:190 , CYS H:191 , GLU H:192 , VAL H:213 , TRP H:215 , GLY H:216 , GLY H:219 , CYS H:220 , GLY H:226 , PHE H:227 , HOH H:2214
BINDING SITE FOR RESIDUE FQI H1257
12
BC3
SOFTWARE
LEU H:65 , TYR H:76 , GLU H:80 , LYS H:81 , ILE H:82 , PRO I:523 , GLU I:524 , GLU I:525 , LEU I:527 , GLN I:528
BINDING SITE FOR RESIDUE TYS H1259
13
BC4
SOFTWARE
ASN H:60G , HOH H:2065
BINDING SITE FOR MONO-SACCHARIDE NAG H1258 BOUND TO ASN H 60G
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (162 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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