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4UCX
Biol. Unit 2
Info
Asym.Unit (798 KB)
Biol.Unit 1 (264 KB)
Biol.Unit 2 (271 KB)
Biol.Unit 3 (268 KB)
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(1)
Title
:
STRUCTURE OF THE T18G SMALL SUBUNIT MUTANT OF D. FRUCTOSOVORANS NIFE-HYDROGENASE
Authors
:
A. Abou-Hamdan, P. Ceccaldi, H. Lebrette, O. Guttierez-Sanz, P. Richa L. Cournac, B. Guigliarelli, A. L. Delacey, C. Leger, A. Volbeda, B. Bu S. Dementin
Date
:
05 Dec 14 (Deposition) - 18 Feb 15 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: A,Q (1x)
Biol. Unit 2: B,R (1x)
Biol. Unit 3: C,S (1x)
Keywords
:
Oxidoreductase, Nife-Hydrogenase, T18G Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Abou-Hamdan, P. Ceccaldi, H. Lebrette, O. Gutierrez-Sanz, P. Richaud, L. Cournac, B. Guigliarelli, A. L. De Lacey, C. Leger, A. Volbeda, B. Burlat, S. Dementin
A Threonine Stabilizes The Nic And Nir Catalytic Intermediates Of [Nife]-Hydrogenase.
J. Biol. Chem. V. 290 8550 2015
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
1b: S-OXY CYSTEINE (CSXb)
1c: S-OXY CYSTEINE (CSXc)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
3a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
3b: CARBONMONOXIDE-(DICYANO) IRON (FCOb)
3c: CARBONMONOXIDE-(DICYANO) IRON (FCOc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
6a: NICKEL (II) ION (NIa)
6b: NICKEL (II) ION (NIb)
6c: NICKEL (II) ION (NIc)
7a: IRON/SULFUR CLUSTER (SF4a)
7b: IRON/SULFUR CLUSTER (SF4b)
7c: IRON/SULFUR CLUSTER (SF4c)
7d: IRON/SULFUR CLUSTER (SF4d)
7e: IRON/SULFUR CLUSTER (SF4e)
7f: IRON/SULFUR CLUSTER (SF4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
FCO
1
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
4
GOL
1
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
NI
-1
Ligand/Ion
NICKEL (II) ION
7
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(8, 8)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: CC2 (SOFTWARE)
5: CC3 (SOFTWARE)
6: CC4 (SOFTWARE)
7: CC5 (SOFTWARE)
8: DC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
HIS B:184 , CYS B:187 , LEU B:190 , CYS B:212 , LEU B:213 , TYR B:214 , CYS B:218 , PRO B:221
BINDING SITE FOR RESIDUE SF4 B1265
2
AC8
SOFTWARE
ASN B:225 , CYS B:227 , PHE B:232 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230
BINDING SITE FOR RESIDUE F3S B1266
3
AC9
SOFTWARE
CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70
BINDING SITE FOR RESIDUE SF4 B1267
4
CC2
SOFTWARE
CSX R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , SER R:499 , CYS R:546 , NI R:1551 , HOH R:2027
BINDING SITE FOR RESIDUE FCO R1550
5
CC3
SOFTWARE
CYS R:72 , CSX R:75 , CYS R:543 , CYS R:546 , FCO R:1550 , HOH R:2027
BINDING SITE FOR RESIDUE NI R1551
6
CC4
SOFTWARE
GLU R:53 , LEU R:495 , HIS R:549 , HOH R:2016 , HOH R:2017 , HOH R:2076
BINDING SITE FOR RESIDUE MG R1553
7
CC5
SOFTWARE
ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLN R:310 , GLU R:445 , HOH R:2037 , HOH R:2069 , HOH R:2113
BINDING SITE FOR RESIDUE GOL R1563
8
DC1
SOFTWARE
LYS R:158 , GLY S:450 , ALA S:451 , ASP S:453 , ASN S:454
BINDING SITE FOR RESIDUE GOL S1562
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (798 KB)
Header - Asym.Unit
Biol.Unit 1 (264 KB)
Header - Biol.Unit 1
Biol.Unit 2 (271 KB)
Header - Biol.Unit 2
Biol.Unit 3 (268 KB)
Header - Biol.Unit 3
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