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4UAZ
Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
DNA POLYMERASE BETA REACTANT COMPLEX WITH A TEMPLATING ADENINE AND INCOMING 8-OXODGTP, 20 S
Authors
:
B. D. Freudenthal, S. H. Wilson, W. A. Beard
Date
:
11 Aug 14 (Deposition) - 12 Nov 14 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,D,P,T
Biol. Unit 1: A,D,P,T (1x)
Keywords
:
Dna Polymerase, Transferase, Lyase-Dna Complex
(Keyword Search:
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Reference
:
B. D. Freudenthal, W. A. Beard, L. Perera, D. D. Shock, T. Kim, T. Schlick, S. H. Wilson
Uncovering The Polymerase-Induced Cytotoxicity Of An Oxidized Nucleotide.
Nature V. 517 635 2015
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOS... (8DGa)
2a: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPH... (8OGa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: PYROPHOSPHATE (PPVa)
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No.
Name
Count
Type
Full Name
1
8DG
1
Ligand/Ion
8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
8OG
1
Mod. Nucleotide
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PPV
1
Ligand/Ion
PYROPHOSPHATE
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Name
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Residues
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1
AC1
SOFTWARE
ASP A:190 , ASP A:192 , ASP A:256 , MG A:402 , 8DG A:403 , HOH A:621 , DC P:10 , 8OG P:11
binding site for residue MG A 401
2
AC2
SOFTWARE
ASP A:190 , ASP A:192 , MG A:401 , 8DG A:403 , PPV A:404 , HOH A:571 , 8OG P:11
binding site for residue MG A 402
3
AC3
SOFTWARE
GLY A:179 , SER A:180 , ARG A:183 , GLY A:189 , ASP A:190 , ASP A:192 , TYR A:271 , THR A:273 , GLY A:274 , ASP A:276 , ASN A:279 , MG A:401 , MG A:402 , PPV A:404 , HOH A:571 , HOH A:580 , HOH A:594 , HOH A:621 , HOH A:640 , HOH A:688 , HOH A:728 , DC P:10 , 8OG P:11 , HOH P:111 , DA T:6
binding site for residue 8DG A 403
4
AC4
SOFTWARE
ARG A:149 , GLY A:179 , SER A:180 , ARG A:183 , SER A:188 , GLY A:189 , ASP A:190 , ASP A:192 , MG A:402 , 8DG A:403 , HOH A:571 , HOH A:580 , HOH A:640 , 8OG P:11
binding site for residue PPV A 404
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SAPs(SNPs)/Variants
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