PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4U8I
Asym. Unit
Info
Asym.Unit (678 KB)
Biol.Unit 1 (668 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF ASPERGILLUS FUMIGATUS UDP-GALACTOPYRANOSE MUTASE MUTANT F66A
Authors
:
I. A. Qureshi, R. Chaudhary, J. J. Tanner
Date
:
03 Aug 14 (Deposition) - 03 Dec 14 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Nucleotide Binding, Mutase, Flavin Adenine Dinucleotide Binding, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Da Fonseca, I. A. Qureshi, R. Mehra-Chaudhary, K. Kizjakina, J. J. Tanner, P. Sobrado
Contributions Of Unique Active Site Residues Of Eukaryotic Udp-Galactopyranose Mutases To Substrate Recognition And Active Site Dynamics.
Biochemistry V. 53 7794 2014
[
close entry info
]
Hetero Components
(3, 58)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAa)
2b: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAb)
2c: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAc)
2d: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAd)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
27
Ligand/Ion
1,2-ETHANEDIOL
2
FDA
4
Ligand/Ion
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
3
SO4
27
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , GLY A:16 , PRO A:17 , THR A:18 , ASP A:38 , SER A:39 , GLY A:44 , GLY A:45 , LEU A:46 , ALA A:47 , VAL A:60 , GLY A:62 , HIS A:63 , VAL A:64 , GLY A:240 , VAL A:242 , THR A:295 , GLU A:373 , GLY A:418 , GLY A:446 , ARG A:447 , GLY A:456 , ASN A:457 , GLN A:458 , SER A:461 , HOH A:719 , HOH A:729 , HOH A:738 , HOH A:770 , HOH A:798 , HOH A:942
binding site for residue FDA A 601
02
AC2
SOFTWARE
ASN A:471 , GLU C:494 , HOH C:831
binding site for residue EDO A 602
03
AC3
SOFTWARE
TRP A:178 , LEU A:179 , GLY A:180 , PRO A:484 , ASP A:485 , ASN A:488
binding site for residue EDO A 603
04
AC4
SOFTWARE
ARG A:452 , ASN A:482 , PRO A:484 , HOH A:845
binding site for residue EDO A 604
05
AC5
SOFTWARE
LYS A:115 , GLU A:116 , ASP A:390 , HOH A:704
binding site for residue EDO A 605
06
AC6
SOFTWARE
ARG A:306 , ASP A:312 , HOH A:873 , HOH A:914
binding site for residue EDO A 606
07
AC7
SOFTWARE
PRO A:307 , GLU A:308 , ARG A:309 , LYS A:402 , HOH A:726
binding site for residue SO4 A 607
08
AC8
SOFTWARE
ASN A:40 , ARG A:413
binding site for residue SO4 A 608
09
AC9
SOFTWARE
LYS A:70 , ARG A:496
binding site for residue SO4 A 609
10
AD1
SOFTWARE
TRP A:86 , TYR A:87 , THR A:88
binding site for residue SO4 A 610
11
AD2
SOFTWARE
THR A:152 , ARG A:160 , HOH A:787
binding site for residue SO4 A 611
12
AD3
SOFTWARE
ARG A:91 , TYR A:104 , ASN A:203 , HOH A:788 , HOH A:793 , HOH A:903
binding site for residue SO4 A 612
13
AD4
SOFTWARE
LYS A:82 , GLU A:83
binding site for residue SO4 A 613
14
AD5
SOFTWARE
THR A:137 , LYS A:138
binding site for residue SO4 A 614
15
AD6
SOFTWARE
GLY B:14 , GLY B:16 , PRO B:17 , THR B:18 , ASP B:38 , SER B:39 , GLY B:45 , LEU B:46 , ALA B:47 , VAL B:60 , GLY B:62 , HIS B:63 , VAL B:64 , GLY B:240 , VAL B:242 , MET B:269 , GLU B:373 , GLY B:418 , GLY B:446 , ARG B:447 , GLY B:456 , ASN B:457 , GLN B:458 , SER B:461 , EDO B:605 , HOH B:762 , HOH B:775 , HOH B:783 , HOH B:785 , HOH B:816 , HOH B:842
binding site for residue FDA B 601
16
AD7
SOFTWARE
ASN B:322 , CYS B:323 , ASP B:390 , EDO B:607 , HOH B:709
binding site for residue EDO B 602
17
AD8
SOFTWARE
GLU B:494 , HOH B:861 , HOH B:907 , TRP D:443 , ASN D:471
binding site for residue EDO B 603
18
AD9
SOFTWARE
TRP B:443 , ASN B:471 , GLU D:494
binding site for residue EDO B 604
19
AE1
SOFTWARE
GLY B:62 , TRP B:315 , ARG B:327 , FDA B:601 , HOH B:741
binding site for residue EDO B 605
20
AE2
SOFTWARE
GLN B:98 , GLU B:116 , GLU B:117 , ASP B:321 , CYS B:323 , PRO B:324 , EDO B:607 , HOH B:714 , HOH B:726
binding site for residue EDO B 606
21
AE3
SOFTWARE
PRO B:114 , GLU B:116 , PRO B:324 , ASP B:390 , EDO B:602 , EDO B:606 , HOH B:718
binding site for residue EDO B 607
22
AE4
SOFTWARE
GLU B:117 , LYS B:120 , HOH B:714
binding site for residue EDO B 608
23
AE5
SOFTWARE
GLU B:427 , ARG B:452 , LEU B:481 , ASN B:482 , PRO B:484 , HOH B:935
binding site for residue EDO B 609
24
AE6
SOFTWARE
LYS B:189 , ASP C:123
binding site for residue EDO B 610
25
AE7
SOFTWARE
GLN B:107 , MET B:125 , MET B:149 , ASN B:187 , HOH B:803
binding site for residue EDO B 611
26
AE8
SOFTWARE
GLY B:202 , TRP B:204 , HOH B:996
binding site for residue EDO B 612
27
AE9
SOFTWARE
ARG B:96 , ASN B:397 , GLU B:399 , HOH B:716 , HOH B:771
binding site for residue EDO B 613
28
AF1
SOFTWARE
PRO B:307 , GLU B:308 , ARG B:309 , LYS B:402 , HOH B:780
binding site for residue SO4 B 614
29
AF2
SOFTWARE
PRO B:114 , LYS B:115 , ASN B:383 , THR B:386 , ASP B:390 , HOH B:702
binding site for residue SO4 B 615
30
AF3
SOFTWARE
ASN B:40 , ASP B:50 , ARG B:413
binding site for residue SO4 B 616
31
AF4
SOFTWARE
TYR B:87 , THR B:88 , HOH B:849
binding site for residue SO4 B 617
32
AF5
SOFTWARE
LYS B:70 , ARG B:496
binding site for residue SO4 B 618
33
AF6
SOFTWARE
THR B:152 , ARG B:160
binding site for residue SO4 B 619
34
AF7
SOFTWARE
ARG B:91 , TYR B:104 , ASN B:203 , HOH B:815 , HOH B:828 , HOH B:851
binding site for residue SO4 B 620
35
AF8
SOFTWARE
GLY C:14 , GLY C:16 , PRO C:17 , THR C:18 , ASP C:38 , SER C:39 , GLY C:45 , LEU C:46 , ALA C:47 , VAL C:60 , GLY C:62 , HIS C:63 , VAL C:64 , GLY C:240 , VAL C:242 , MET C:269 , GLU C:373 , GLY C:418 , TYR C:419 , GLY C:446 , ARG C:447 , GLY C:456 , ASN C:457 , GLN C:458 , SER C:461 , EDO C:603 , HOH C:746 , HOH C:754 , HOH C:792 , HOH C:813 , HOH C:820 , HOH C:912
binding site for residue FDA C 601
36
AF9
SOFTWARE
GLU A:494 , ASN C:471
binding site for residue EDO C 602
37
AG1
SOFTWARE
VAL C:64 , ALA C:66 , ARG C:91 , FDA C:601
binding site for residue EDO C 603
38
AG2
SOFTWARE
TRP C:178 , GLY C:180 , PRO C:484 , ASP C:485 , ASN C:488
binding site for residue EDO C 604
39
AG3
SOFTWARE
GLN C:107 , MET C:149 , ALA C:185 , PRO C:186 , ASN C:187 , HOH C:882
binding site for residue EDO C 605
40
AG4
SOFTWARE
ALA C:201 , GLY C:202 , TRP C:204
binding site for residue EDO C 606
41
AG5
SOFTWARE
ARG C:306 , ASP C:312 , HOH C:772
binding site for residue EDO C 607
42
AG6
SOFTWARE
PRO C:307 , GLU C:308 , ARG C:309 , LYS C:402 , HOH C:837
binding site for residue SO4 C 608
43
AG7
SOFTWARE
VAL C:147 , THR C:152 , ARG C:160
binding site for residue SO4 C 609
44
AG8
SOFTWARE
ASN B:248 , LYS C:70 , ARG C:496
binding site for residue SO4 C 610
45
AG9
SOFTWARE
ASN C:40 , ASP C:50 , ARG C:413
binding site for residue SO4 C 611
46
AH1
SOFTWARE
PRO C:114 , LYS C:115
binding site for residue SO4 C 612
47
AH2
SOFTWARE
ARG C:91 , TYR C:104 , ASN C:203 , HOH C:763 , HOH C:765
binding site for residue SO4 C 613
48
AH3
SOFTWARE
TRP C:86 , TYR C:87 , THR C:88
binding site for residue SO4 C 614
49
AH4
SOFTWARE
GLY D:14 , GLY D:16 , PRO D:17 , THR D:18 , ASP D:38 , SER D:39 , GLY D:45 , LEU D:46 , ALA D:47 , VAL D:60 , GLY D:62 , HIS D:63 , VAL D:64 , GLY D:240 , VAL D:242 , MET D:269 , GLU D:373 , GLY D:418 , GLY D:446 , ARG D:447 , GLY D:456 , ASN D:457 , GLN D:458 , SER D:461 , HOH D:749 , HOH D:751 , HOH D:775 , HOH D:780 , HOH D:794 , HOH D:829
binding site for residue FDA D 601
50
AH5
SOFTWARE
TRP D:178 , LEU D:179 , PRO D:484 , ASP D:485 , ASN D:488
binding site for residue EDO D 602
51
AH6
SOFTWARE
MET D:149 , ALA D:185 , ASN D:187
binding site for residue EDO D 603
52
AH7
SOFTWARE
HOH B:750 , GLN D:438 , ASN D:471 , GLU D:478
binding site for residue EDO D 604
53
AH8
SOFTWARE
ARG D:452 , ASN D:482 , HOH D:798
binding site for residue EDO D 605
54
AH9
SOFTWARE
PRO D:307 , GLU D:308 , ARG D:309 , LYS D:402 , HOH D:917
binding site for residue SO4 D 606
55
AI1
SOFTWARE
VAL A:382 , ASN A:383 , GLN A:384 , GLU A:385 , LYS D:199 , THR D:200
binding site for residue SO4 D 607
56
AI2
SOFTWARE
PRO D:114 , LYS D:115 , HOH D:827 , HOH D:887
binding site for residue SO4 D 608
57
AI3
SOFTWARE
THR D:152 , ARG D:160
binding site for residue SO4 D 609
58
AI4
SOFTWARE
ASN D:40 , ARG D:413
binding site for residue SO4 D 610
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (678 KB)
Header - Asym.Unit
Biol.Unit 1 (668 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4U8I
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help