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4U0W
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YVOA FROM BACILLUS SUBTILIS IN COMPLEX WITH N-ACETYLGLUCOSAMINE-6-PHOSPHATE
Authors
:
S. B. Fillenberg, Y. A. Muller
Date
:
14 Jul 14 (Deposition) - 14 Jan 15 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription, Repressor, Bacterial Transcription Regulation, Transcription Factor, Gntr/Hutc Family, Chorismate Lyase Fold, N- Acetylglucosamine Utilization
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Fillenberg, F. C. Grau, G. Seidel, Y. A. Muller
Structural Insight Into Operator Dre-Sites Recognition And Effector Binding In The Gntr/Hutc Transcription Regulator Nagr.
Nucleic Acids Res. V. 43 1283 2015
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE (16Ga)
1b: N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE (16Gb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
16G
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE
2
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:88 , PHE A:89 , THR A:90 , ARG A:133 , ARG A:135 , GLU A:145 , SER A:165 , ILE A:166 , TYR A:167 , GLN A:183 , ILE A:209 , ARG A:211 , GLU A:222 , ALA A:224 , TYR A:228 , HOH A:439 , HOH A:442 , HOH A:489
binding site for residue 16G A 301
02
AC2
SOFTWARE
TYR A:13 , MET A:16 , GLU A:17 , LYS A:20 , GLU A:61
binding site for residue GOL A 302
03
AC3
SOFTWARE
ARG A:180 , HOH A:520
binding site for residue EDO A 303
04
AC4
SOFTWARE
ILE A:11 , ILE A:46 , SER A:47 , THR A:50 , PRO B:125
binding site for residue EDO A 304
05
AC5
SOFTWARE
LYS A:24 , ASN A:25 , GLY A:26 , ALA A:204
binding site for residue EDO A 305
06
AC6
SOFTWARE
ILE A:23 , ASP A:231 , HOH A:493
binding site for residue EDO A 306
07
AC7
SOFTWARE
MET A:79 , GLU A:80 , ARG A:96
binding site for residue EDO A 307
08
AC8
SOFTWARE
PRO A:10 , ILE A:11 , TYR A:12 , HOH A:408 , LYS B:130
binding site for residue EDO A 308
09
AC9
SOFTWARE
SER B:88 , PHE B:89 , THR B:90 , ARG B:133 , ARG B:135 , GLU B:145 , SER B:165 , ILE B:166 , TYR B:167 , ILE B:209 , ARG B:211 , GLU B:222 , ALA B:224 , TYR B:228 , HOH B:441 , HOH B:442
binding site for residue 16G B 301
10
AD1
SOFTWARE
MET B:16 , GLU B:17 , LYS B:20 , GLU B:61
binding site for residue GOL B 302
11
AD2
SOFTWARE
GLU B:80 , GLN B:81 , ALA B:82 , THR B:87 , ASP B:92 , ARG B:96 , HOH B:491
binding site for residue EDO B 303
12
AD3
SOFTWARE
SER B:179 , ARG B:180 , LEU B:215 , HOH B:405 , HOH B:497
binding site for residue EDO B 304
13
AD4
SOFTWARE
ILE B:110 , LYS B:130 , HIS B:148 , EDO B:306
binding site for residue EDO B 305
14
AD5
SOFTWARE
GLU B:115 , EDO B:305 , HOH B:517
binding site for residue EDO B 306
15
AD6
SOFTWARE
PRO A:125 , ILE B:46 , SER B:47 , THR B:50
binding site for residue EDO B 307
16
AD7
SOFTWARE
ILE B:23 , ASP B:231 , ARG B:232 , HOH B:499
binding site for residue EDO B 308
17
AD8
SOFTWARE
LYS A:130 , PRO B:10 , ILE B:11 , TYR B:12 , THR B:50
binding site for residue EDO B 309
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (93 KB)
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