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Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (89 KB)
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Title
:
CO-CRYSTALS OF THE TERNARY COMPLEX CONTAINING A T-BOX STEM I RNA, ITS COGNATE TRNAGLY, AND B. SUBTILIS YBXF PROTEIN, TREATED BY REMOVING LITHIUM SULFATE AND REPLACING MG2+ WITH SR2+ POST CRYSTALLIZATION
Authors
:
J. Zhang, A. R. Ferre-D'Amare
Date
:
11 Jul 14 (Deposition) - 10 Sep 14 (Release) - 24 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.67
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Rna, Riboswitch, Trna, T-Box, Ribosomal Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, A. R. Ferre-D'Amare
Dramatic Improvement Of Crystals Of Large Rnas By Cation Replacement And Dehydration.
Structure V. 22 1363 2014
(for further references see the
PDB file header
)
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Hetero Components
(2, 38)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
2a: STRONTIUM ION (SRa)
2aa: STRONTIUM ION (SRaa)
2ab: STRONTIUM ION (SRab)
2ac: STRONTIUM ION (SRac)
2ad: STRONTIUM ION (SRad)
2ae: STRONTIUM ION (SRae)
2af: STRONTIUM ION (SRaf)
2ag: STRONTIUM ION (SRag)
2ah: STRONTIUM ION (SRah)
2ai: STRONTIUM ION (SRai)
2aj: STRONTIUM ION (SRaj)
2b: STRONTIUM ION (SRb)
2c: STRONTIUM ION (SRc)
2d: STRONTIUM ION (SRd)
2e: STRONTIUM ION (SRe)
2f: STRONTIUM ION (SRf)
2g: STRONTIUM ION (SRg)
2h: STRONTIUM ION (SRh)
2i: STRONTIUM ION (SRi)
2j: STRONTIUM ION (SRj)
2k: STRONTIUM ION (SRk)
2l: STRONTIUM ION (SRl)
2m: STRONTIUM ION (SRm)
2n: STRONTIUM ION (SRn)
2o: STRONTIUM ION (SRo)
2p: STRONTIUM ION (SRp)
2q: STRONTIUM ION (SRq)
2r: STRONTIUM ION (SRr)
2s: STRONTIUM ION (SRs)
2t: STRONTIUM ION (SRt)
2u: STRONTIUM ION (SRu)
2v: STRONTIUM ION (SRv)
2w: STRONTIUM ION (SRw)
2x: STRONTIUM ION (SRx)
2y: STRONTIUM ION (SRy)
2z: STRONTIUM ION (SRz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
2
SR
36
Ligand/Ion
STRONTIUM ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G B:43 , SR B:112
binding site for residue SR B 104
02
AC2
SOFTWARE
G B:50 , G B:51
binding site for residue SR B 105
03
AC3
SOFTWARE
U B:54
binding site for residue SR B 106
04
AC4
SOFTWARE
G B:41 , G B:42
binding site for residue SR B 108
05
AC5
SOFTWARE
U B:8 , A B:9
binding site for residue SR B 110
06
AC6
SOFTWARE
G B:52 , A B:57
binding site for residue SR B 111
07
AC7
SOFTWARE
G B:44 , SR B:104
binding site for residue SR B 112
08
AC8
SOFTWARE
G B:33
binding site for residue SR B 113
09
AC9
SOFTWARE
A B:37
binding site for residue SR B 115
10
AD1
SOFTWARE
G C:43
binding site for residue SR C 201
11
AD2
SOFTWARE
A C:39 , U C:40 , C C:102 , SR C:221
binding site for residue SR C 202
12
AD3
SOFTWARE
G C:59 , SR C:214
binding site for residue SR C 203
13
AD4
SOFTWARE
G C:52 , G C:53
binding site for residue SR C 204
14
AD5
SOFTWARE
A C:11
binding site for residue SR C 205
15
AD6
SOFTWARE
G C:7 , G C:97
binding site for residue SR C 206
16
AD7
SOFTWARE
U C:50
binding site for residue SR C 208
17
AD8
SOFTWARE
A C:17 , G C:18
binding site for residue SR C 209
18
AD9
SOFTWARE
A C:8 , U C:9
binding site for residue SR C 211
19
AE1
SOFTWARE
G C:15
binding site for residue SR C 213
20
AE2
SOFTWARE
G C:59 , SR C:203
binding site for residue SR C 214
21
AE3
SOFTWARE
C C:79
binding site for residue SR C 218
22
AE4
SOFTWARE
U C:40 , U C:41
binding site for residue SR C 219
23
AE5
SOFTWARE
A C:16 , A C:17 , A C:90
binding site for residue SR C 220
24
AE6
SOFTWARE
A C:39 , C C:102 , SR C:202
binding site for residue SR C 221
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (95 KB)
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