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4TU8
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
STRUCTURE OF U2AF65 VARIANT WITH BRU5A6 DNA
Authors
:
K. J. Mclaughlin, J. L. Jenkins, A. A. Agrawal, C. L. Kielkopf
Date
:
24 Jun 14 (Deposition) - 26 Nov 14 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,E,P
Biol. Unit 1: A,B,E,P (1x)
Keywords
:
Rna Splicing Factor, Rna Recognition Motif, Rna Binding Protein, Rna Binding Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Agrawal, K. J. Mclaughlin, J. L. Jenkins, C. L. Kielkopf
Structure-Guided U2Af65 Variant Improves Recognition And Splicing Of A Defective Pre-Mrna.
Proc. Natl. Acad. Sci. Usa V. 111 17420 2014
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Hetero Components
(7, 32)
Info
All Hetero Components
1a: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUa)
1b: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUb)
2a: N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOX... (CPQa)
3a: 1,4-DIETHYLENE DIOXIDE (DIOa)
3b: 1,4-DIETHYLENE DIOXIDE (DIOb)
3c: 1,4-DIETHYLENE DIOXIDE (DIOc)
3d: 1,4-DIETHYLENE DIOXIDE (DIOd)
3e: 1,4-DIETHYLENE DIOXIDE (DIOe)
3f: 1,4-DIETHYLENE DIOXIDE (DIOf)
3g: 1,4-DIETHYLENE DIOXIDE (DIOg)
4a: (DUa)
4b: (DUb)
4c: (DUc)
4d: (DUd)
4e: (DUe)
4f: (DUf)
4g: (DUg)
4h: (DUh)
4i: (DUi)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
5d: 1,2-ETHANEDIOL (EDOd)
5e: 1,2-ETHANEDIOL (EDOe)
5f: 1,2-ETHANEDIOL (EDOf)
5g: 1,2-ETHANEDIOL (EDOg)
5h: 1,2-ETHANEDIOL (EDOh)
5i: 1,2-ETHANEDIOL (EDOi)
6a: GLYCEROL (GOLa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BRU
2
Mod. Nucleotide
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2
CPQ
1
Ligand/Ion
N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
3
DIO
7
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
4
DU
9
Mod. Residue
5
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
6
GOL
1
Ligand/Ion
GLYCEROL
7
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:268 , TYR A:269 , LEU A:270 , ASN A:271 , GLY A:297 , LEU A:298 , SER A:299
binding site for residue DIO A 401
02
AC2
SOFTWARE
PRO A:144 , ALA A:148 , TYR A:232 , GLN A:233 , LEU A:325
binding site for residue DIO A 402
03
AC3
SOFTWARE
GLY A:146 , SER A:147 , ALA A:148 , ARG A:150 , SER A:281 , HOH A:515
binding site for residue GOL A 403
04
AC4
SOFTWARE
LEU A:285
binding site for residue EDO A 404
05
AC5
SOFTWARE
VAL A:205 , ASP A:206 , GLY A:319 , LEU A:320 , ASN A:321 , MET A:323 , LYS A:329 , HOH A:501
binding site for residue EDO A 405
06
AC6
SOFTWARE
ARG A:150 , GLN A:190 , GLU A:201
binding site for residue EDO A 406
07
AC7
SOFTWARE
PRO A:144 , GLN A:274
binding site for residue EDO A 408
08
AC8
SOFTWARE
LYS A:225 , ARG A:227
binding site for residue SO4 A 409
09
AC9
SOFTWARE
ARG A:228 , ILE A:310 , HOH A:639
binding site for residue SO4 A 410
10
AD1
SOFTWARE
LYS B:276 , LEU B:285 , LYS B:286
binding site for residue DIO B 401
11
AD2
SOFTWARE
PRO B:182 , GLY B:183 , HIS B:259 , HOH B:507
binding site for residue DIO B 402
12
AD3
SOFTWARE
ASN B:268 , TYR B:269 , LEU B:270 , ASN B:271 , GLY B:297 , LEU B:298 , SER B:299 , HOH B:522
binding site for residue DIO B 403
13
AD4
SOFTWARE
SER B:204 , VAL B:205 , HOH B:549
binding site for residue DIO B 404
14
AD5
SOFTWARE
ARG B:228 , HOH B:598 , HOH B:622
binding site for residue DIO B 405
15
AD6
SOFTWARE
TYR B:269 , GLN B:274 , GLY B:326 , EDO B:408 , EDO B:409 , HOH B:596 , HOH B:615
binding site for residue CPQ B 406
16
AD7
SOFTWARE
LYS B:292 , ASP B:293 , SER B:294 , LYS B:300 , BRU P:5 , DA P:6
binding site for residue EDO B 407
17
AD8
SOFTWARE
ASP B:327 , CPQ B:406
binding site for residue EDO B 408
18
AD9
SOFTWARE
CPQ B:406
binding site for residue EDO B 409
19
AE1
SOFTWARE
ALA B:318 , GLY B:319 , ASN B:321 , MET B:323
binding site for residue EDO B 410
20
AE2
SOFTWARE
ARG A:174 , LYS B:225 , ARG B:227 , HOH E:109
binding site for residue SO4 B 411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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