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4TSY
Biol. Unit 1
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Asym.Unit (263 KB)
Biol.Unit 1 (504 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRAC WITH LIPIDS
Authors
:
J. M. M. Caaveiro, K. Tanaka, K. Tsumoto
Date
:
19 Jun 14 (Deposition) - 04 Mar 15 (Release) - 03 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.14
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Toxin, Actinoporin Pore-Forming Toxin, Membrane Lipids, Phosphocholine, Lipid-Protein Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tanaka, J. M. M. Caaveiro, K. Morante, J. M. Gonzalez-Manas, K. Tsumoto
Structural Basis For Self-Assembly Of A Cytolytic Pore Line By Protein And Lipid
Nat Commun V. 6 6337 2015
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 64)
Info
All Hetero Components
1a: HEPTANE-1,2,3-TRIOL (HTOa)
2a: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJa)
2b: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJb)
2c: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJc)
2d: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJd)
2e: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJe)
2f: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJf)
2g: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJg)
2h: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJh)
2i: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJi)
2j: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJj)
2k: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJk)
2l: 2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-... (HXJl)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HTO
2
Ligand/Ion
HEPTANE-1,2,3-TRIOL
2
HXJ
24
Ligand/Ion
2-[[(E,2S,3R)-2-(HEXANOYLAMINO)-3-OXIDANYL-DEC-4-ENOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL-TRIMETHYL-AZANIUM
3
SO4
38
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:53 , SER A:54 , THR A:84 , GLY A:85 , PRO A:107 , TYR A:108 , TYR A:113 , TYR A:133 , TYR A:137 , SO4 A:204
binding site for residue HXJ A 201
02
AC2
SOFTWARE
ASN A:111 , TRP A:112 , TYR A:113 , SER A:114 , TRP A:116 , TYR A:137 , PRO A:142
binding site for residue HXJ A 202
03
AC3
SOFTWARE
ARG A:120 , TYR A:122 , LYS A:123
binding site for residue SO4 A 203
04
AC4
SOFTWARE
ARG A:53 , GLN A:130 , TYR A:133 , TYR A:138 , HXJ A:201
binding site for residue SO4 A 204
05
AC5
SOFTWARE
TRP A:149 , ARG A:161 , HIS A:175 , HIS B:63
binding site for residue SO4 A 205
06
AC6
SOFTWARE
THR A:44 , SER A:95 , HTO A:209 , LYS C:123
binding site for residue SO4 A 206
07
AC7
SOFTWARE
ARG A:79 , HIS D:169
binding site for residue SO4 A 207
08
AC8
SOFTWARE
TYR A:51 , ARG A:53
binding site for residue SO4 A 208
09
AC9
SOFTWARE
LYS A:43 , SER A:95 , ASP A:96 , SO4 A:206 , TYR C:156
binding site for residue HTO A 209
10
AD1
SOFTWARE
VAL A:29 , ARG A:31 , SER A:166 , SER A:167 , GLY A:168 , THR B:56 , ASN B:78 , ARG B:79 , HOH B:301
binding site for residue HXJ B 201
11
AD2
SOFTWARE
SER B:54 , THR B:84 , GLY B:85 , TYR B:108 , TYR B:113 , TYR B:133 , TYR B:137 , SO4 B:205
binding site for residue HXJ B 202
12
AD3
SOFTWARE
ASN B:111 , TRP B:112 , TYR B:113 , TRP B:116 , TYR B:137 , PRO B:142 , SO4 B:207 , HOH B:303
binding site for residue HXJ B 203
13
AD4
SOFTWARE
ARG B:120 , TYR B:122 , LYS B:123
binding site for residue SO4 B 204
14
AD5
SOFTWARE
ARG B:53 , GLN B:130 , TYR B:133 , TYR B:138 , HXJ B:202
binding site for residue SO4 B 205
15
AD6
SOFTWARE
ARG B:161 , GLU B:173 , HIS B:175 , HIS C:63
binding site for residue SO4 B 206
16
AD7
SOFTWARE
SER B:114 , TRP B:116 , ARG B:144 , HXJ B:203 , HOH B:303
binding site for residue SO4 B 207
17
AD8
SOFTWARE
TRP B:149 , HIS B:150 , SER B:151 , ARG C:127
binding site for residue SO4 B 208
18
AD9
SOFTWARE
ARG B:31 , SER B:166 , SER B:167 , GLY B:168 , THR C:56 , ASN C:78 , ARG C:79
binding site for residue HXJ C 201
19
AE1
SOFTWARE
SER C:54 , THR C:84 , GLY C:85 , TYR C:108 , TRP C:112 , TYR C:113 , TYR C:133 , TYR C:137 , SO4 C:206
binding site for residue HXJ C 202
20
AE2
SOFTWARE
ASN C:111 , TRP C:112 , TYR C:113 , TRP C:116 , TYR C:137 , PRO C:142 , SO4 C:208
binding site for residue HXJ C 203
21
AE3
SOFTWARE
LEU C:26 , ARG C:31 , TYR C:110 , SER C:166 , SER C:167 , GLY C:168 , THR D:56 , ASN D:78 , ARG D:79 , VAL D:82
binding site for residue HXJ C 204
22
AE4
SOFTWARE
ARG C:120 , VAL C:121 , TYR C:122 , LYS C:123
binding site for residue SO4 C 205
23
AE5
SOFTWARE
ARG C:53 , GLN C:130 , TYR C:133 , TYR C:138 , HXJ C:202
binding site for residue SO4 C 206
24
AE6
SOFTWARE
ARG C:161 , GLU C:173 , HIS C:175 , HOH C:307 , HIS D:63
binding site for residue SO4 C 207
25
AE7
SOFTWARE
SER C:114 , ARG C:144 , HXJ C:203
binding site for residue SO4 C 208
26
AE8
SOFTWARE
SER D:54 , ALA D:83 , THR D:84 , GLY D:85 , TYR D:108 , TRP D:112 , TYR D:113 , TYR D:133 , TYR D:137 , SO4 D:205 , HOH D:303
binding site for residue HXJ D 201
27
AE9
SOFTWARE
ASN D:111 , TRP D:112 , TYR D:113 , TRP D:116 , TYR D:137 , PRO D:142 , SO4 D:207
binding site for residue HXJ D 202
28
AF1
SOFTWARE
ASN A:78 , ARG A:79 , ARG D:31 , TYR D:110 , SER D:166 , SER D:167 , GLY D:168
binding site for residue HXJ D 203
29
AF2
SOFTWARE
ARG D:120 , TYR D:122 , LYS D:123
binding site for residue SO4 D 204
30
AF3
SOFTWARE
ARG D:53 , GLN D:130 , TYR D:133 , TYR D:138 , HXJ D:201
binding site for residue SO4 D 205
31
AF4
SOFTWARE
HIS A:63 , ARG D:161 , GLU D:173 , HIS D:175
binding site for residue SO4 D 206
32
AF5
SOFTWARE
SER D:114 , TRP D:116 , ARG D:144 , HXJ D:202
binding site for residue SO4 D 207
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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