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4TSQ
Biol. Unit 2
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Asym.Unit (388 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (67 KB)
Biol.Unit 5 (67 KB)
Biol.Unit 6 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM III)
Authors
:
J. M. M. Caaveiro, K. Tanaka, K. Tsumoto
Date
:
19 Jun 14 (Deposition) - 04 Mar 15 (Release) - 03 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Toxin, Actinoporin Pore-Forming Toxin, Membrane Lipids, Phosphocholine, Lipid-Protein Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tanaka, J. M. M. Caaveiro, K. Morante, J. M. Gonzalez-Manas, K. Tsumoto
Structural Basis For Self-Assembly Of A Cytolytic Pore Line By Protein And Lipid
Nat Commun V. 6 6337 2015
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGa)
2b: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGb)
2c: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGc)
2d: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGd)
2e: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGe)
2f: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGf)
2g: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGg)
2h: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGh)
2i: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGi)
2j: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGj)
2k: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGk)
2l: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGl)
2m: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGm)
2n: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGn)
2o: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGo)
2p: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGp)
3a: PHOSPHOCHOLINE (PCa)
3b: PHOSPHOCHOLINE (PCb)
3c: PHOSPHOCHOLINE (PCc)
3d: PHOSPHOCHOLINE (PCd)
3e: PHOSPHOCHOLINE (PCe)
3f: PHOSPHOCHOLINE (PCf)
3g: PHOSPHOCHOLINE (PCg)
3h: PHOSPHOCHOLINE (PCh)
4a: THIOCYANATE ION (SCNa)
4b: THIOCYANATE ION (SCNb)
4c: THIOCYANATE ION (SCNc)
4d: THIOCYANATE ION (SCNd)
4e: THIOCYANATE ION (SCNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
HXG
4
Ligand/Ion
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3
PC
-1
Ligand/Ion
PHOSPHOCHOLINE
4
SCN
1
Ligand/Ion
THIOCYANATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC9 (SOFTWARE)
2: AD1 (SOFTWARE)
3: AD2 (SOFTWARE)
4: AD3 (SOFTWARE)
5: AD4 (SOFTWARE)
6: AD5 (SOFTWARE)
7: AE4 (SOFTWARE)
8: AF3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
TRP B:112 , TYR B:113 , TRP B:116 , TYR B:137 , TYR B:138 , HXG B:202 , HXG B:204 , HOH B:355 , HOH B:400 , HOH B:407
binding site for residue HXG B 201
2
AD1
SOFTWARE
ARG B:53 , SER B:54 , THR B:84 , GLY B:85 , VAL B:87 , SER B:105 , PRO B:107 , TYR B:108 , TYR B:113 , TYR B:133 , TYR B:137 , TYR B:138 , HXG B:201 , HXG B:203 , HOH B:383
binding site for residue HXG B 202
3
AD2
SOFTWARE
ARG B:53 , GLN B:130 , TYR B:133 , GLU B:134 , TYR B:138 , HXG B:202 , HXG B:204 , CL B:206
binding site for residue HXG B 203
4
AD3
SOFTWARE
ASN B:111 , TRP B:112 , SER B:114 , ARG B:144 , HXG B:201 , HXG B:203 , HOH B:355 , HXG E:201
binding site for residue HXG B 204
5
AD4
SOFTWARE
LYS B:43 , MET B:94 , ASP B:96 , GLY B:97 , ASN B:98 , TYR B:156
binding site for residue SCN B 205
6
AD5
SOFTWARE
HIS B:139 , HXG B:203
binding site for residue CL B 206
7
AE4
SOFTWARE
HXG B:204 , TRP E:112 , TYR E:113 , TRP E:116 , TYR E:137 , PC E:203 , HOH E:345 , HOH E:385
binding site for residue HXG E 201
8
AF3
SOFTWARE
TRP B:149 , HIS B:150 , SER B:151 , ARG B:161 , PHE F:16 , ASP F:17 , HOH F:304
binding site for residue SCN F 204
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (388 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (67 KB)
Header - Biol.Unit 3
Biol.Unit 4 (67 KB)
Header - Biol.Unit 4
Biol.Unit 5 (67 KB)
Header - Biol.Unit 5
Biol.Unit 6 (66 KB)
Header - Biol.Unit 6
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