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4TSQ
Asym. Unit
Info
Asym.Unit (388 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (67 KB)
Biol.Unit 5 (67 KB)
Biol.Unit 6 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM III)
Authors
:
J. M. M. Caaveiro, K. Tanaka, K. Tsumoto
Date
:
19 Jun 14 (Deposition) - 04 Mar 15 (Release) - 03 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Toxin, Actinoporin Pore-Forming Toxin, Membrane Lipids, Phosphocholine, Lipid-Protein Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tanaka, J. M. M. Caaveiro, K. Morante, J. M. Gonzalez-Manas, K. Tsumoto
Structural Basis For Self-Assembly Of A Cytolytic Pore Line By Protein And Lipid
Nat Commun V. 6 6337 2015
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGa)
2b: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGb)
2c: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGc)
2d: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGd)
2e: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGe)
2f: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGf)
2g: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGg)
2h: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGh)
2i: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGi)
2j: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGj)
2k: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGk)
2l: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGl)
2m: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGm)
2n: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGn)
2o: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGo)
2p: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGp)
3a: PHOSPHOCHOLINE (PCa)
3b: PHOSPHOCHOLINE (PCb)
3c: PHOSPHOCHOLINE (PCc)
3d: PHOSPHOCHOLINE (PCd)
3e: PHOSPHOCHOLINE (PCe)
3f: PHOSPHOCHOLINE (PCf)
3g: PHOSPHOCHOLINE (PCg)
3h: PHOSPHOCHOLINE (PCh)
4a: THIOCYANATE ION (SCNa)
4b: THIOCYANATE ION (SCNb)
4c: THIOCYANATE ION (SCNc)
4d: THIOCYANATE ION (SCNd)
4e: THIOCYANATE ION (SCNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
HXG
16
Ligand/Ion
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3
PC
8
Ligand/Ion
PHOSPHOCHOLINE
4
SCN
5
Ligand/Ion
THIOCYANATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:53 , SER A:54 , THR A:84 , GLY A:85 , VAL A:87 , SER A:105 , PRO A:107 , TYR A:108 , TRP A:112 , TYR A:113 , TYR A:133 , TYR A:137 , HXG A:203 , HOH A:366 , HOH A:425 , HOH A:440
binding site for residue HXG A 201
02
AC2
SOFTWARE
TRP A:112 , TYR A:113 , TRP A:116 , TYR A:137 , TYR A:138 , HXG A:204 , HOH A:382 , HOH A:407 , HOH A:466
binding site for residue HXG A 202
03
AC3
SOFTWARE
ARG A:53 , GLN A:130 , TYR A:133 , GLU A:134 , TYR A:138 , HXG A:201 , PC A:207
binding site for residue HXG A 203
04
AC4
SOFTWARE
ASN A:111 , TRP A:112 , SER A:114 , ARG A:144 , HXG A:202 , PC A:207 , HOH A:382 , HOH A:460
binding site for residue HXG A 204
05
AC5
SOFTWARE
VAL A:121 , TYR A:122 , LYS A:123 , ARG A:140 , LEU A:154 , TYR A:156 , HOH A:410 , HOH A:420 , ILE E:9 , ASP E:17 , VAL E:18 , THR E:21 , VAL E:22 , ALA E:25 , ILE E:59 , LEU E:72 , HOH E:357
binding site for residue HXG A 205
06
AC6
SOFTWARE
ASN A:78 , VAL A:82 , THR A:84 , HOH A:392 , HOH A:440 , ASN F:111 , TRP F:112 , TYR F:113 , SER F:114
binding site for residue PC A 206
07
AC7
SOFTWARE
TYR A:138 , HIS A:139 , HXG A:203 , HXG A:204
binding site for residue PC A 207
08
AC8
SOFTWARE
LYS A:43 , MET A:94 , ASP A:96 , GLY A:97 , ASN A:98
binding site for residue SCN A 208
09
AC9
SOFTWARE
TRP B:112 , TYR B:113 , TRP B:116 , TYR B:137 , TYR B:138 , HXG B:202 , HXG B:204 , HOH B:355 , HOH B:400 , HOH B:407
binding site for residue HXG B 201
10
AD1
SOFTWARE
ARG B:53 , SER B:54 , THR B:84 , GLY B:85 , VAL B:87 , SER B:105 , PRO B:107 , TYR B:108 , TYR B:113 , TYR B:133 , TYR B:137 , TYR B:138 , HXG B:201 , HXG B:203 , HOH B:383
binding site for residue HXG B 202
11
AD2
SOFTWARE
ARG B:53 , GLN B:130 , TYR B:133 , GLU B:134 , TYR B:138 , HXG B:202 , HXG B:204 , CL B:206
binding site for residue HXG B 203
12
AD3
SOFTWARE
ASN B:111 , TRP B:112 , SER B:114 , ARG B:144 , HXG B:201 , HXG B:203 , HOH B:355 , HXG E:201
binding site for residue HXG B 204
13
AD4
SOFTWARE
LYS B:43 , MET B:94 , ASP B:96 , GLY B:97 , ASN B:98 , TYR B:156
binding site for residue SCN B 205
14
AD5
SOFTWARE
HIS B:139 , HXG B:203
binding site for residue CL B 206
15
AD6
SOFTWARE
TRP C:112 , TYR C:113 , SER C:114 , TRP C:116 , TYR C:137 , HOH C:393 , HOH C:409
binding site for residue HXG C 201
16
AD7
SOFTWARE
ARG C:53 , SER C:54 , THR C:84 , GLY C:85 , VAL C:87 , SER C:105 , PRO C:107 , TYR C:108 , TYR C:113 , TYR C:133 , TYR C:137 , TYR C:138 , PC C:203 , HOH C:363
binding site for residue HXG C 202
17
AD8
SOFTWARE
ARG C:53 , GLN C:130 , TYR C:133 , TYR C:138 , HXG C:202 , ARG D:53
binding site for residue PC C 203
18
AD9
SOFTWARE
TRP D:112 , TYR D:113 , SER D:114 , TRP D:116 , TYR D:137 , TYR D:138 , HOH D:400 , HOH D:405
binding site for residue HXG D 201
19
AE1
SOFTWARE
SER D:54 , ALA D:83 , THR D:84 , GLY D:85 , VAL D:87 , SER D:105 , PRO D:107 , TYR D:108 , TYR D:113 , TYR D:133 , TYR D:137 , PC D:203 , HOH D:366 , HOH D:404
binding site for residue HXG D 202
20
AE2
SOFTWARE
ARG D:53 , TYR D:133 , GLU D:134 , TYR D:138 , HXG D:202 , HOH D:404
binding site for residue PC D 203
21
AE3
SOFTWARE
LYS D:43 , MET D:94 , ASP D:96 , GLY D:97 , ASN D:98 , TYR D:156
binding site for residue SCN D 204
22
AE4
SOFTWARE
HXG B:204 , TRP E:112 , TYR E:113 , TRP E:116 , TYR E:137 , PC E:203 , HOH E:345 , HOH E:385
binding site for residue HXG E 201
23
AE5
SOFTWARE
SER E:54 , ALA E:83 , THR E:84 , GLY E:85 , VAL E:87 , SER E:105 , PRO E:107 , TYR E:108 , TYR E:113 , TYR E:133 , TYR E:137 , PC E:204 , HOH E:354
binding site for residue HXG E 202
24
AE6
SOFTWARE
LYS D:64 , ASN E:111 , TRP E:112 , SER E:114 , ARG E:144 , HXG E:201 , HOH E:345 , HOH E:355
binding site for residue PC E 203
25
AE7
SOFTWARE
ARG E:53 , GLN E:130 , TYR E:133 , GLU E:134 , TYR E:138 , HXG E:202
binding site for residue PC E 204
26
AE8
SOFTWARE
LYS E:43 , MET E:94 , ASP E:96 , GLY E:97 , ASN E:98
binding site for residue SCN E 205
27
AE9
SOFTWARE
TRP F:112 , TYR F:113 , SER F:114 , TRP F:116 , TYR F:137 , TYR F:138
binding site for residue HXG F 201
28
AF1
SOFTWARE
SER F:54 , GLY F:85 , VAL F:87 , SER F:105 , PRO F:107 , TYR F:108 , TYR F:113 , TYR F:133 , TYR F:137 , PC F:203 , HOH F:359
binding site for residue PC F 202
29
AF2
SOFTWARE
ARG F:53 , TYR F:113 , GLN F:130 , TYR F:133 , TYR F:138 , PC F:202
binding site for residue PC F 203
30
AF3
SOFTWARE
TRP B:149 , HIS B:150 , SER B:151 , ARG B:161 , PHE F:16 , ASP F:17 , HOH F:304
binding site for residue SCN F 204
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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[
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Exons
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SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
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Info
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