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Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF IFRS BOUND WITH 2-(5-BROMOTHIENYL)-L-ALA AND ATP
Authors
:
A. Nakamura, P. O'Donoghue, D. Soll
Date
:
11 Jun 14 (Deposition) - 12 Nov 14 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amino Acyl-Trna Synthetases, Archaeal Proteins, Evolution, Molecular, Genetic Code, Substrate Specificity, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. T. Guo, Y. S. Wang, A. Nakamura, D. Eiler, J. M. Kavran, M. Wong, L. L. Kiessling, T. A. Steitz, P. O'Donoghue, D. Soll
Polyspecific Pyrrolysyl-Trna Synthetases From Directed Evolution.
Proc. Natl. Acad. Sci. Usa V. 111 16724 2014
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: 3-(5-BROMOTHIOPHEN-2-YL)-L-ALANINE (33Wa)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
33W
1
Ligand/Ion
3-(5-BROMOTHIOPHEN-2-YL)-L-ALANINE
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
4
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ATP A:503 , HOH A:652 , HOH A:653 , HOH A:654 , HOH A:655
binding site for residue MG A 501
02
AC2
SOFTWARE
GLU A:396 , SER A:399 , ATP A:503 , HOH A:656 , HOH A:657
binding site for residue MG A 502
03
AC3
SOFTWARE
ARG A:330 , GLU A:332 , HIS A:338 , LEU A:339 , PHE A:342 , MET A:344 , GLU A:396 , LEU A:397 , SER A:398 , SER A:399 , GLY A:421 , GLY A:423 , ARG A:426 , MG A:501 , MG A:502 , EDO A:511 , HOH A:634 , HOH A:651 , HOH A:654
binding site for residue ATP A 503
04
AC4
SOFTWARE
MET A:300 , LEU A:301 , ALA A:302 , MET A:344 , SER A:346 , ILE A:348 , TRP A:417 , ALA A:420 , GLY A:421
binding site for residue 33W A 504
05
AC5
SOFTWARE
ASN A:241 , ARG A:439 , ALA A:440 , ALA A:441 , TYR A:446 , ASN A:448 , GLY A:449
binding site for residue EDO A 505
06
AC6
SOFTWARE
GLU A:249 , LYS A:431 , HIS A:432
binding site for residue EDO A 506
07
AC7
SOFTWARE
ASP A:256 , ARG A:257 , HIS A:369
binding site for residue EDO A 507
08
AC8
SOFTWARE
ASP A:373 , LYS A:375 , MET A:391 , HIS A:392 , GLY A:393
binding site for residue EDO A 508
09
AC9
SOFTWARE
ARG A:310 , ASP A:313 , GLY A:412 , ILE A:413 , ASP A:414 , LYS A:415
binding site for residue EDO A 509
10
AD1
SOFTWARE
TYR A:272 , ASN A:307 , ARG A:310 , LYS A:311 , GLU A:357 , GLU A:444
binding site for residue EDO A 510
11
AD2
SOFTWARE
GLU A:337 , HIS A:338 , ASP A:394 , LEU A:395 , GLU A:396 , ARG A:426 , ATP A:503
binding site for residue EDO A 511
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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