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4TO6
Asym. Unit
Info
Asym.Unit (696 KB)
Biol.Unit 1 (686 KB)
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(1)
Title
:
STRUCTURE BASIS OF CELLULAR DNTP REGULATION, SAMHD1-DGTP-DATP-DTTP/DGTP COMPLEX
Authors
:
X. Ji, C. Tang, Q. Zhao, W. Wang, Y. Xiong
Date
:
05 Jun 14 (Deposition) - 01 Oct 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Samhd1, Hiv, Restriction Factor, Dntpase, Dntp Regulation, Host Pathogen Interaction, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Ji, C. Tang, Q. Zhao, W. Wang, Y. Xiong
Structural Basis Of Cellular Dntp Regulation By Samhd1.
Proc. Natl. Acad. Sci. Usa V. 111 E4305 2014
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
1b: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTb)
1c: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTc)
1d: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTd)
1e: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTe)
2a: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPa)
2b: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPb)
2c: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPc)
2d: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
4b: THYMIDINE-5'-TRIPHOSPHATE (TTPb)
4c: THYMIDINE-5'-TRIPHOSPHATE (TTPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DGT
5
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
DTP
4
Ligand/Ion
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
TTP
3
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:149 , ARG A:164 , ARG A:206 , ASN A:207 , HIS A:210 , HIS A:215 , ASP A:311 , LYS A:312 , TYR A:315 , ASP A:319 , ARG A:366 , TYR A:374 , GLN A:375 , HOH A:813 , HOH A:816
binding site for residue TTP A 701
02
AC2
SOFTWARE
TYR A:155 , VAL A:156 , VAL A:378 , ARG A:451 , LYS A:455 , HOH A:807 , LYS C:523 , DTP C:701 , HOH C:802 , LYS D:116 , VAL D:117 , ILE D:118 , ASP D:137 , GLN D:142 , ARG D:145 , PHE D:165 , MG D:701
binding site for residue DGT A 702
03
AC3
SOFTWARE
ARG A:333 , ARG A:352 , LYS A:354 , ASN A:358 , LYS A:523 , HOH A:808 , HOH A:809 , VAL B:117 , ASN B:119 , HIS B:125 , MG B:703 , VAL C:156 , PHE C:157 , ARG C:372 , HIS C:376 , LYS C:377 , DGT C:704
binding site for residue DTP A 703
04
AC4
SOFTWARE
LYS A:116 , DTP B:704 , HOH B:803 , DGT D:704
binding site for residue MG A 704
05
AC5
SOFTWARE
GLN B:149 , LEU B:150 , ARG B:164 , ARG B:206 , HIS B:210 , HIS B:215 , HIS B:233 , ASP B:311 , LYS B:312 , TYR B:315 , ASP B:319 , ARG B:366 , TYR B:374 , GLN B:375 , HOH B:802
binding site for residue TTP B 701
06
AC6
SOFTWARE
TYR B:155 , VAL B:156 , VAL B:378 , ARG B:451 , LYS B:455 , LYS C:116 , VAL C:117 , ILE C:118 , ASP C:137 , GLN C:142 , ARG C:145 , PHE C:165 , MG C:702 , LYS D:523 , DTP D:702 , HOH D:805
binding site for residue DGT B 702
07
AC7
SOFTWARE
LYS A:523 , DTP A:703 , HOH A:808 , LYS B:116 , DGT C:704
binding site for residue MG B 703
08
AC8
SOFTWARE
VAL A:117 , ASN A:119 , MG A:704 , ARG B:333 , ARG B:352 , LYS B:354 , ASN B:358 , LYS B:523 , HOH B:803 , HOH B:804 , VAL D:156 , PHE D:157 , ARG D:372 , HIS D:376 , LYS D:377 , DGT D:704
binding site for residue DTP B 704
09
AC9
SOFTWARE
VAL A:156 , PHE A:157 , ARG A:372 , HIS A:376 , LYS A:377 , DGT A:702 , ARG C:333 , PHE C:337 , ARG C:352 , LYS C:354 , ASN C:358 , LYS C:523 , HOH C:802 , HOH C:804 , VAL D:117 , ASN D:119 , MG D:701
binding site for residue DTP C 701
10
AD1
SOFTWARE
DGT B:702 , LYS C:116 , DTP D:702 , HOH D:805
binding site for residue MG C 702
11
AD2
SOFTWARE
GLN C:149 , LEU C:150 , ARG C:164 , ARG C:206 , HIS C:210 , HIS C:215 , HIS C:233 , ASP C:311 , LYS C:312 , TYR C:315 , ASP C:319 , ARG C:366 , TYR C:374 , GLN C:375
binding site for residue DGT C 703
12
AD3
SOFTWARE
LYS A:523 , DTP A:703 , HOH A:808 , LYS B:116 , VAL B:117 , ILE B:118 , ASP B:137 , GLN B:142 , ARG B:145 , PHE B:165 , MG B:703 , TYR C:155 , VAL C:156 , VAL C:378 , ARG C:451 , LYS C:455 , HOH C:805
binding site for residue DGT C 704
13
AD4
SOFTWARE
DGT A:702 , LYS C:523 , DTP C:701 , HOH C:802 , LYS D:116
binding site for residue MG D 701
14
AD5
SOFTWARE
VAL B:156 , PHE B:157 , ARG B:372 , HIS B:376 , LYS B:377 , VAL B:378 , DGT B:702 , VAL C:117 , ASN C:119 , MG C:702 , ARG D:333 , PHE D:337 , ARG D:352 , LYS D:354 , ASN D:358 , LYS D:523 , HOH D:805
binding site for residue DTP D 702
15
AD6
SOFTWARE
GLN D:149 , LEU D:150 , ARG D:164 , ARG D:206 , HIS D:210 , HIS D:215 , HIS D:233 , ASP D:311 , LYS D:312 , TYR D:315 , ASP D:319 , ARG D:366 , HIS D:370 , TYR D:374 , GLN D:375
binding site for residue TTP D 703
16
AD7
SOFTWARE
LYS A:116 , VAL A:117 , ILE A:118 , ASP A:137 , GLN A:142 , ARG A:145 , PHE A:165 , MG A:704 , LYS B:523 , DTP B:704 , HOH B:803 , TYR D:155 , VAL D:156 , VAL D:378 , ARG D:451 , LYS D:455 , HOH D:806
binding site for residue DGT D 704
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Asym.Unit (696 KB)
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