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4TMT
Biol. Unit 3
Info
Asym.Unit (252 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (125 KB)
Biol.Unit 3 (245 KB)
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(1)
Title
:
TRANSLATION INITIATION FACTOR EIF5B (517-858) MUTANT D533A FROM C. THERMOPHILUM, BOUND TO GTPGAMMAS
Authors
:
B. Kuhle, R. Ficner
Date
:
02 Jun 14 (Deposition) - 24 Sep 14 (Release) - 24 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Translation Factor, Initiation, Gtpase, Monovalent Cation, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Kuhle, R. Ficner
A Monovalent Cation Acts As Structural And Catalytic Cofactor In Translational Gtpases.
Embo J. V. 33 2547 2014
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
5a: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPa)
5b: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPb)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
4
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
5
GSP
2
Ligand/Ion
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
6
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:533 , THR A:534 , GLY A:535 , LYS A:536 , THR A:537 , LYS A:538 , GLN A:549 , GLY A:555 , ILE A:556 , THR A:557 , GLY A:597 , ASN A:648 , LYS A:649 , ASP A:651 , ARG A:652 , SER A:716 , ALA A:717 , HIS A:718 , MG A:902 , HOH A:1064 , HOH A:1065 , HOH A:1070 , HOH A:1232
binding site for residue GSP A 901
02
AC2
SOFTWARE
THR A:537 , THR A:557 , GSP A:901 , HOH A:1064 , HOH A:1065
binding site for residue MG A 902
03
AC3
SOFTWARE
GLY A:694 , PHE A:695 , ASN A:696 , ARG A:708 , TYR A:709 , HOH A:1002
binding site for residue EDO A 903
04
AC4
SOFTWARE
LYS A:542 , ILE A:543 , GLN A:545 , LYS A:573 , ASN A:661 , HOH A:1024
binding site for residue EDO A 904
05
AC5
SOFTWARE
LYS A:704 , ASN A:705 , PHE A:706 , ALA A:707 , HOH A:1013 , HOH A:1254 , HOH A:1304
binding site for residue EDO A 905
06
AC6
SOFTWARE
ILE A:621 , MET A:622 , HIS A:623 , ARG A:682 , GLN A:685 , VAL A:686 , GLN A:689 , HOH A:1228
binding site for residue EDO A 906
07
AC7
SOFTWARE
GLU A:599 , SER A:600 , SER A:602 , HOH A:1200 , HOH A:1241 , LYS B:571 , HOH B:1176
binding site for residue EDO A 907
08
AC8
SOFTWARE
PRO A:642 , PHE A:643 , ARG A:737 , HOH A:1267
binding site for residue CL A 908
09
AC9
SOFTWARE
CYS A:734 , GLN A:735 , GLU A:736 , MET A:738 , SER A:740 , MET A:743 , HOH A:1202 , HOH A:1293
binding site for residue DTT A 909
10
AD1
SOFTWARE
VAL B:532 , ALA B:533 , THR B:534 , GLY B:535 , LYS B:536 , THR B:537 , LYS B:538 , GLN B:549 , GLY B:555 , ILE B:556 , THR B:557 , GLY B:597 , ASN B:648 , LYS B:649 , ASP B:651 , ARG B:652 , SER B:716 , ALA B:717 , HIS B:718 , MG B:902 , HOH B:1071 , HOH B:1072 , HOH B:1086 , HOH B:1203 , HOH B:1214 , HOH B:1237
binding site for residue GSP B 901
11
AD2
SOFTWARE
THR B:537 , THR B:557 , GSP B:901 , HOH B:1071 , HOH B:1072
binding site for residue MG B 902
12
AD3
SOFTWARE
LEU B:521 , EDO B:904 , HOH B:1095 , HOH B:1278
binding site for residue EDO B 903
13
AD4
SOFTWARE
ASP B:519 , EDO B:903 , HOH B:1095 , HOH B:1278 , HOH B:1313
binding site for residue EDO B 904
14
AD5
SOFTWARE
ILE B:560 , GLU B:754 , ASP B:766 , ARG B:806 , HOH B:1098
binding site for residue EDO B 905
15
AD6
SOFTWARE
PRO B:799 , GLU B:804 , LEU B:805 , ILE B:807 , GLY B:809 , GLN B:810 , TYR B:811 , HOH B:1141 , HOH B:1354
binding site for residue EDO B 906
16
AD7
SOFTWARE
LYS B:687 , ASN B:696 , SER B:697 , GLU B:698 , HOH B:1090 , HOH B:1213
binding site for residue EDO B 907
17
AD8
SOFTWARE
VAL B:577 , ASN B:578 , LYS B:579 , ASP B:580 , HOH B:1183
binding site for residue EDO B 908
18
AD9
SOFTWARE
LEU B:748 , GLY B:772 , ILE B:773 , ARG B:775 , HOH B:1167 , HOH B:1358
binding site for residue EDO B 909
19
AE1
SOFTWARE
TYR B:564 , PRO B:801 , GLN B:821 , HOH B:1100 , HOH B:1252
binding site for residue ACY B 910
20
AE2
SOFTWARE
ILE B:543 , ARG B:544 , GLN B:545 , LYS B:573
binding site for residue CL B 911
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (252 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (125 KB)
Header - Biol.Unit 2
Biol.Unit 3 (245 KB)
Header - Biol.Unit 3
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