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4TLD
Asym. Unit
Info
Asym.Unit (488 KB)
Biol.Unit 1 (479 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF N-TERMINAL C1 DOMAIN OF KAIC
Authors
:
J. Abe, T. B. Hiyama, A. Mukaiyama, S. Son, S. Akiyama
Date
:
29 May 14 (Deposition) - 01 Jul 15 (Release) - 29 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Serine/Threonine-Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Abe, T. B. Hiyama, A. Mukaiyama, S. Son, T. Mori, S. Saito, M. Osako, J. Wolanin, E. Yamashita, T. Kondo, S. Akiyama
Atomic-Scale Origins Of Slowness In The Cyanobacterial Circadian Clock
Science V. 349 312 2015
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
1c: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSc)
1d: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSd)
1e: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSe)
1f: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
6
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
CL
6
Ligand/Ion
CHLORIDE ION
3
MG
6
Ligand/Ion
MAGNESIUM ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:53 , AGS A:303 , HOH A:410 , HOH A:411 , HOH A:412
binding site for residue MG A 301
02
AC2
SOFTWARE
ARG A:218 , THR A:238 , ILE A:239
binding site for residue CL A 302
03
AC3
SOFTWARE
SER A:48 , GLY A:49 , THR A:50 , GLY A:51 , LYS A:52 , THR A:53 , LEU A:54 , SER A:89 , PHE A:90 , ARG A:218 , ILE A:239 , THR A:240 , ASP A:241 , MG A:301 , HOH A:410 , HOH A:411 , HOH A:412 , HOH A:415 , HOH A:449 , HOH A:468 , PHE B:199 , LYS B:224 , LEU B:225 , ARG B:226 , THR B:228 , HIS B:230 , HOH B:435
binding site for residue AGS A 303
04
AC4
SOFTWARE
THR B:53 , AGS B:303 , HOH B:422 , HOH B:423 , HOH B:424
binding site for residue MG B 301
05
AC5
SOFTWARE
ARG B:218 , THR B:238 , ILE B:239
binding site for residue CL B 302
06
AC6
SOFTWARE
SER B:48 , GLY B:49 , THR B:50 , GLY B:51 , LYS B:52 , THR B:53 , LEU B:54 , SER B:89 , PHE B:90 , ARG B:218 , ILE B:239 , ASP B:241 , MG B:301 , HOH B:410 , HOH B:422 , HOH B:423 , HOH B:424 , HOH B:427 , HOH B:434 , HOH B:516 , PHE C:199 , LYS C:224 , LEU C:225 , ARG C:226 , THR C:228 , SER C:229 , HIS C:230
binding site for residue AGS B 303
07
AC7
SOFTWARE
THR C:53 , AGS C:303 , HOH C:426 , HOH C:427 , HOH C:428
binding site for residue MG C 301
08
AC8
SOFTWARE
ARG C:218 , THR C:238 , ILE C:239
binding site for residue CL C 302
09
AC9
SOFTWARE
SER C:48 , GLY C:49 , THR C:50 , GLY C:51 , LYS C:52 , THR C:53 , LEU C:54 , SER C:89 , PHE C:90 , ARG C:218 , ILE C:239 , ASP C:241 , MG C:301 , HOH C:426 , HOH C:427 , HOH C:428 , HOH C:431 , HOH C:456 , HOH C:499 , HOH C:559 , PHE D:199 , LYS D:224 , LEU D:225 , ARG D:226 , THR D:228 , SER D:229 , HIS D:230 , LYS D:232 , HOH D:444
binding site for residue AGS C 303
10
AD1
SOFTWARE
THR D:53 , AGS D:303 , HOH D:428 , HOH D:429 , HOH D:430
binding site for residue MG D 301
11
AD2
SOFTWARE
ARG D:218 , THR D:238 , ILE D:239 , HOH D:505
binding site for residue CL D 302
12
AD3
SOFTWARE
SER D:48 , GLY D:49 , THR D:50 , GLY D:51 , LYS D:52 , THR D:53 , LEU D:54 , SER D:89 , PHE D:90 , ARG D:218 , ILE D:239 , THR D:240 , ASP D:241 , MG D:301 , HOH D:428 , HOH D:429 , HOH D:430 , HOH D:439 , HOH D:445 , HOH D:498 , HOH D:553 , PHE E:199 , LYS E:224 , LEU E:225 , ARG E:226 , THR E:228 , SER E:229 , HIS E:230 , HOH E:516
binding site for residue AGS D 303
13
AD4
SOFTWARE
THR E:53 , AGS E:303 , HOH E:417 , HOH E:418 , HOH E:419
binding site for residue MG E 301
14
AD5
SOFTWARE
ARG E:218 , THR E:238 , ILE E:239
binding site for residue CL E 302
15
AD6
SOFTWARE
SER E:48 , GLY E:49 , THR E:50 , GLY E:51 , LYS E:52 , THR E:53 , LEU E:54 , SER E:89 , PHE E:90 , ARG E:218 , ILE E:239 , ASP E:241 , MG E:301 , HOH E:417 , HOH E:418 , HOH E:419 , HOH E:429 , HOH E:458 , HOH E:485 , HOH E:509 , PHE F:199 , LYS F:224 , LEU F:225 , ARG F:226 , THR F:228 , HIS F:230 , LYS F:232 , HOH F:451 , HOH F:484
binding site for residue AGS E 303
16
AD7
SOFTWARE
PHE A:199 , LYS A:224 , LEU A:225 , ARG A:226 , GLY A:227 , THR A:228 , SER A:229 , HIS A:230 , LYS A:232 , SER F:48 , GLY F:49 , THR F:50 , GLY F:51 , LYS F:52 , THR F:53 , LEU F:54 , PHE F:90 , ARG F:218 , ILE F:239 , ASP F:241 , MG F:301 , HOH F:432 , HOH F:433 , HOH F:434 , HOH F:435 , HOH F:436 , HOH F:437
binding site for residue AGS F 303
17
AD8
SOFTWARE
THR F:53 , AGS F:303 , HOH F:432 , HOH F:436 , HOH F:437
binding site for residue MG F 301
18
AD9
SOFTWARE
ARG F:218 , THR F:238 , ILE F:239
binding site for residue CL F 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (488 KB)
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