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4TKV
Biol. Unit 5
Info
Asym.Unit (735 KB)
Biol.Unit 1 (367 KB)
Biol.Unit 2 (368 KB)
Biol.Unit 3 (365 KB)
Biol.Unit 4 (366 KB)
Biol.Unit 5 (725 KB)
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(1)
Title
:
CO-BOUND NITROGENASE MOFE-PROTEIN FROM A. VINELANDII
Authors
:
T. Spatzal, K. Perez, O. Einsle, J. B. Howard, D. C. Rees
Date
:
28 May 14 (Deposition) - 01 Oct 14 (Release) - 15 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: B,C (1x)
Biol. Unit 4: C,D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Nitrogenase, Femo-Cofactor, Inhibition, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Spatzal, K. A. Perez, O. Einsle, J. B. Howard, D. C. Rees
Ligand Binding To The Femo-Cofactor: Structures Of Co-Bound And Reactivated Nitrogenase.
Science V. 345 1620 2014
[
close entry info
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Hetero Components
(6, 24)
Info
All Hetero Components
1a: FE(8)-S(7) CLUSTER (CLFa)
1b: FE(8)-S(7) CLUSTER (CLFb)
2a: CARBON MONOXIDE (CMOa)
2b: CARBON MONOXIDE (CMOb)
2c: CARBON MONOXIDE (CMOc)
2d: CARBON MONOXIDE (CMOd)
2e: CARBON MONOXIDE (CMOe)
2f: CARBON MONOXIDE (CMOf)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
4a: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAa)
4b: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAb)
5a: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICEa)
5b: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICEb)
5c: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICEc)
5d: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICEd)
6a: IMIDAZOLE (IMDa)
6b: IMIDAZOLE (IMDb)
6c: IMIDAZOLE (IMDc)
6d: IMIDAZOLE (IMDd)
6e: IMIDAZOLE (IMDe)
6f: IMIDAZOLE (IMDf)
6g: IMIDAZOLE (IMDg)
6h: IMIDAZOLE (IMDh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CLF
2
Ligand/Ion
FE(8)-S(7) CLUSTER
2
CMO
6
Ligand/Ion
CARBON MONOXIDE
3
FE2
2
Ligand/Ion
FE (II) ION
4
HCA
2
Ligand/Ion
3-HYDROXY-3-CARBOXY-ADIPIC ACID
5
ICE
4
Ligand/Ion
IRON-SULFUR-MOLYBDENUM CLUSTER WITH INTERSTITIAL CARBON
6
IMD
8
Ligand/Ion
IMIDAZOLE
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , ARG A:96 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , ICE A:502 , HOH A:642 , HOH A:647 , HOH A:649 , HOH A:657 , HOH A:671 , HOH A:674 , HOH A:693 , HOH A:740 , HOH B:737 , HOH B:765
binding site for residue HCA A 501
02
AC2
SOFTWARE
VAL A:70 , ARG A:96 , TYR A:229 , CYS A:275 , GLY A:356 , GLY A:357 , LEU A:358 , ARG A:359 , HIS A:442 , HCA A:501 , CMO A:504
binding site for residue ICE A 502
03
AC3
SOFTWARE
TRP A:294 , HOH A:775
binding site for residue IMD A 503
04
AC4
SOFTWARE
VAL A:70 , HIS A:195 , PHE A:381 , ICE A:502
binding site for residue CMO A 504
05
AC5
SOFTWARE
TYR A:100 , THR A:111 , HOH A:797 , HOH A:835 , ARG B:453 , HOH B:1093
binding site for residue CMO A 505
06
AC6
SOFTWARE
ARG A:93 , THR A:111 , PHE B:450 , ARG B:453 , HOH B:735
binding site for residue ICE A 506
07
AC7
SOFTWARE
CYS A:62 , TYR A:64 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188
binding site for residue CLF A 507
08
AC8
SOFTWARE
LEU B:253 , ASP B:256 , GLY B:275 , THR B:276 , GLU B:280 , HOH B:916
binding site for residue IMD B 601
09
AC9
SOFTWARE
SER B:482 , THR B:483 , GLN B:492 , THR B:496 , HOH B:761
binding site for residue IMD B 602
10
AD1
SOFTWARE
GLY A:157 , GLU B:120 , ALA B:123 , GLN C:41 , LYS C:44
binding site for residue IMD B 603
11
AD2
SOFTWARE
LEU B:466 , ARG B:468 , HOH B:943 , HOH B:1078
binding site for residue CMO B 604
12
AD3
SOFTWARE
ASP B:353 , ASP B:357 , HOH B:800 , ARG D:108 , GLU D:109 , HOH D:803
binding site for residue FE2 B 605
13
AD4
SOFTWARE
ARG B:108 , GLU B:109 , HOH B:806 , ASP D:353 , ASP D:357 , HOH D:797
binding site for residue FE2 B 606
14
AD5
SOFTWARE
ALA C:65 , ARG C:96 , GLN C:191 , GLY C:424 , ILE C:425 , HIS C:442 , ICE C:502 , HOH C:644 , HOH C:645 , HOH C:649 , HOH C:654 , HOH C:655 , HOH C:671 , HOH C:700 , HOH C:717 , HOH D:745 , HOH D:769
binding site for residue HCA C 501
15
AD6
SOFTWARE
VAL C:70 , ARG C:96 , TYR C:229 , CYS C:275 , GLY C:356 , GLY C:357 , LEU C:358 , ARG C:359 , HIS C:442 , HCA C:501 , CMO C:504
binding site for residue ICE C 502
16
AD7
SOFTWARE
TRP C:294 , HOH C:742 , HOH C:938
binding site for residue IMD C 503
17
AD8
SOFTWARE
VAL C:70 , HIS C:195 , PHE C:381 , ICE C:502
binding site for residue CMO C 504
18
AD9
SOFTWARE
TYR C:100 , THR C:104 , THR C:111 , HOH C:796 , HOH C:812 , ARG D:453 , HOH D:1092
binding site for residue CMO C 505
19
AE1
SOFTWARE
ARG C:93 , THR C:111 , PHE D:450 , ARG D:453 , HOH D:730
binding site for residue ICE C 506
20
AE2
SOFTWARE
CYS C:62 , TYR C:64 , PRO C:85 , GLY C:87 , CYS C:88 , TYR C:91 , CYS C:154 , GLY C:185 , CYS D:70 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188
binding site for residue CLF C 507
21
AE3
SOFTWARE
SER D:482 , THR D:483 , GLN D:492 , THR D:496 , HOH D:725
binding site for residue IMD D 601
22
AE4
SOFTWARE
LEU D:253 , ASP D:256 , GLY D:275 , THR D:276 , GLU D:280
binding site for residue IMD D 602
23
AE5
SOFTWARE
GLN A:41 , LYS A:44 , GLY C:157 , GLU D:120
binding site for residue IMD D 603
24
AE6
SOFTWARE
LEU D:466 , ILE D:467 , ARG D:468 , HOH D:905 , HOH D:1066
binding site for residue CMO D 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (735 KB)
Header - Asym.Unit
Biol.Unit 1 (367 KB)
Header - Biol.Unit 1
Biol.Unit 2 (368 KB)
Header - Biol.Unit 2
Biol.Unit 3 (365 KB)
Header - Biol.Unit 3
Biol.Unit 4 (366 KB)
Header - Biol.Unit 4
Biol.Unit 5 (725 KB)
Header - Biol.Unit 5
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