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4RY5
Asym. Unit
Info
Asym.Unit (390 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
C-TERMINAL MUTANT (W550N) OF HCV/J4 RNA POLYMERASE
Authors
:
J. Jaeger, A. Cherry, C. Dennis
Date
:
13 Dec 14 (Deposition) - 31 Dec 14 (Release) - 11 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hepatitis C Virus, Replication, Function Analysis, Viral Rna Polymerase, Rdrp, Rna Rntp Mg, Nucleotide Transfer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. Cherry, C. A. Dennis, A. Baron, L. E. Eisele, P. A. Thommes, J. Jaeger
Hydrophobic And Charged Residues In The C-Terminal Arm Of Hepatitis C Virus Rna-Dependent Rna Polymerase Regulate Initiation And Elongation.
J. Virol. V. 89 2052 2015
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: URIDINE 5'-TRIPHOSPHATE (UTPa)
2b: URIDINE 5'-TRIPHOSPHATE (UTPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
UTP
2
Ligand/Ion
URIDINE 5'-TRIPHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:220 , ASP A:318 , ASP A:319 , UTP A:1003
BINDING SITE FOR RESIDUE MN A 1001
2
AC2
SOFTWARE
ASP A:220 , THR A:221 , ASP A:318 , UTP A:1003
BINDING SITE FOR RESIDUE MN A 1002
3
AC3
SOFTWARE
LYS A:141 , ARG A:158 , LEU A:159 , ILE A:160 , ASP A:220 , THR A:221 , ARG A:222 , CYS A:223 , PHE A:224 , ASP A:225 , SER A:282 , THR A:287 , ASN A:291 , ASP A:318 , ASP A:319 , SER A:556 , MN A:1001 , MN A:1002 , HOH A:1209 , HOH A:1221 , HOH A:1270 , HOH A:1306
BINDING SITE FOR RESIDUE UTP A 1003
4
AC4
SOFTWARE
ASP B:220 , ASP B:318 , ASP B:319 , UTP B:1003 , HOH B:1188
BINDING SITE FOR RESIDUE MN B 1001
5
AC5
SOFTWARE
ASP B:220 , THR B:221 , ASP B:318 , UTP B:1003
BINDING SITE FOR RESIDUE MN B 1002
6
AC6
SOFTWARE
LYS B:141 , ARG B:158 , LEU B:159 , ILE B:160 , ASP B:220 , THR B:221 , ARG B:222 , CYS B:223 , PHE B:224 , ASP B:225 , SER B:282 , ASP B:318 , ASP B:319 , SER B:556 , GLY B:557 , MN B:1001 , MN B:1002 , HOH B:1165 , HOH B:1183 , HOH B:1188 , HOH B:1211 , HOH B:1255
BINDING SITE FOR RESIDUE UTP B 1003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Atom Selection
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Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (390 KB)
Header - Asym.Unit
Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
Biol.Unit 2 (189 KB)
Header - Biol.Unit 2
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