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4RXR
Biol. Unit 1
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Asym.Unit (180 KB)
Biol.Unit 1 (343 KB)
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(1)
Title
:
THE STRUCTURE OF GTP-DCTP-BOUND SAMHD1
Authors
:
C. F. Zhu, W. Wei, X. Peng, Y. H. Dong, Y. Gong, X. F. Yu
Date
:
11 Dec 14 (Deposition) - 11 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Hd-Domain, Hydrolase, Dntp And Gtp Binding, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. F. Zhu, W. Wei, X. Peng, Y. H. Dong, Y. Gong, X. F. Yu
The Mechanism Of Substrate-Controlled Allosteric Regulation Of Samhd1 Activated By Gtp.
Acta Crystallogr. , Sect. D V. 71 516 2015
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPa)
1b: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPb)
1c: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPc)
1d: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPd)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
DCP
8
Ligand/Ion
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2
GTP
4
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:149 , LEU A:150 , ARG A:164 , HIS A:215 , LYS A:312 , TYR A:315 , ASP A:319 , ARG A:366 , HIS A:370 , TYR A:374 , GLN A:375 , HOH A:822 , HOH A:829 , HOH A:832 , HOH A:835
BINDING SITE FOR RESIDUE DCP A 701
2
AC2
SOFTWARE
LYS A:116 , GTP B:801 , DCP B:802 , HOH B:924
BINDING SITE FOR RESIDUE MG A 702
3
AC3
SOFTWARE
VAL A:156 , PHE A:157 , ARG A:333 , PHE A:337 , ARG A:352 , LYS A:354 , ASN A:358 , ARG A:372 , HIS A:376 , LYS A:377 , VAL A:378 , LYS A:523 , HOH A:814 , HOH A:915 , HOH A:917 , HOH A:926 , HOH A:982 , VAL B:117 , ASN B:119 , GTP B:803 , MG B:805 , HOH B:933
BINDING SITE FOR RESIDUE DCP A 703
4
AC4
SOFTWARE
LYS A:116 , VAL A:117 , ILE A:118 , ASP A:137 , GLN A:142 , ARG A:145 , PHE A:165 , MG A:702 , TYR B:155 , VAL B:156 , VAL B:378 , ARG B:451 , LYS B:523 , DCP B:802 , HOH B:924 , HOH B:936 , HOH B:939 , HOH B:971 , HOH B:1013
BINDING SITE FOR RESIDUE GTP B 801
5
AC5
SOFTWARE
VAL A:117 , ILE A:118 , ASN A:119 , MG A:702 , VAL B:156 , PHE B:157 , ARG B:333 , PHE B:337 , ARG B:352 , LYS B:354 , ASN B:358 , ARG B:372 , HIS B:376 , LYS B:377 , VAL B:378 , LYS B:523 , GTP B:801 , HOH B:921 , HOH B:924 , HOH B:1018 , HOH B:1067
BINDING SITE FOR RESIDUE DCP B 802
6
AC6
SOFTWARE
TYR A:155 , VAL A:156 , VAL A:378 , ARG A:451 , LYS A:523 , DCP A:703 , HOH A:874 , LYS B:116 , VAL B:117 , ILE B:118 , ASP B:137 , GLN B:142 , ARG B:145 , PHE B:165 , MG B:805 , HOH B:933 , HOH B:946 , HOH B:1034 , HOH B:1038 , HOH B:1065
BINDING SITE FOR RESIDUE GTP B 803
7
AC7
SOFTWARE
GLN B:149 , LEU B:150 , ARG B:164 , HIS B:215 , GLU B:234 , LYS B:312 , TYR B:315 , ASP B:319 , ARG B:366 , HIS B:370 , TYR B:374 , GLN B:375 , HOH B:903 , HOH B:909 , HOH B:932 , HOH B:954
BINDING SITE FOR RESIDUE DCP B 804
8
AC8
SOFTWARE
DCP A:703 , LYS B:116 , GTP B:803 , HOH B:933
BINDING SITE FOR RESIDUE MG B 805
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Asym.Unit (180 KB)
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