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4RUS
Biol. Unit 2
Info
Asym.Unit (471 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (158 KB)
Biol.Unit 3 (158 KB)
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(1)
Title
:
CARP FISHELECTIN, HOLO FORM
Authors
:
S. Capaldi, B. Faggion, M. E. Carrizo, L. Destefanis, M. C. Gonzalez, M. M. Bovi, M. Galliano, H. L. Monaco
Date
:
21 Nov 14 (Deposition) - 08 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Six-Blade Beta Propeller, Lectin, Eggs, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Capaldi, B. Faggion, M. E. Carrizo, L. Destefanis, M. C. Gonzalez, M. Perduca, M. Bovi, M. Galliano, H. L. Monaco
Three-Dimensional Structure And Ligand-Binding Site Of Carp Fishelectin (Fel).
Acta Crystallogr. , Sect. D V. 71 1123 2015
[
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
5c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
5d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
5e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
5f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
-1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(14, 14)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
GLY A:76 , LEU A:77 , LEU A:78 , TRP A:116 , HOH A:419 , GLY D:76 , LEU D:77 , LEU D:78 , ASN D:93 , ASP D:97 , TYR D:99 , TRP D:116 , HOH D:450
BINDING SITE FOR RESIDUE 1PE A 305
02
AC6
SOFTWARE
ASP A:7 , HOH A:462 , ASP D:7 , HOH D:439 , ASP E:7 , HOH E:418
BINDING SITE FOR RESIDUE MG A 306
03
BC4
SOFTWARE
ASP B:7 , GLY B:8 , LYS C:11 , ASN C:25 , ASN C:27 , LYS C:45 , THR C:59 , NAG C:302 , HOH C:411 , HOH C:432
BINDING SITE FOR RESIDUE NAG C 301
04
BC5
SOFTWARE
VAL B:5 , NAG C:301 , HOH C:411
BINDING SITE FOR RESIDUE NAG C 302
05
BC6
SOFTWARE
ASP C:14 , ASP C:82 , GLU C:170 , HOH C:401 , HOH C:402 , HOH C:403
BINDING SITE FOR RESIDUE CA C 303
06
BC7
SOFTWARE
GLY C:76 , LEU C:77 , TYR C:99 , TRP C:116 , HOH C:441 , HOH C:459
BINDING SITE FOR RESIDUE NAG C 304
07
BC8
SOFTWARE
GLY C:164 , LEU C:165 , TYR C:187 , TRP C:202 , HOH C:492 , NDG D:304
BINDING SITE FOR RESIDUE NAG C 305
08
BC9
SOFTWARE
ASP C:86 , SER C:150 , HOH C:507 , ASP D:86 , SER D:150 , HOH D:524
BINDING SITE FOR RESIDUE MG C 306
09
CC1
SOFTWARE
LYS D:11 , ASN D:25 , ASN D:27 , THR D:59 , NAG D:302 , HOH D:428 , ASP E:2
BINDING SITE FOR RESIDUE NAG D 301
10
CC2
SOFTWARE
THR D:59 , NAG D:301
BINDING SITE FOR RESIDUE NAG D 302
11
CC3
SOFTWARE
ASP D:14 , ASP D:82 , GLU D:170 , HOH D:401 , HOH D:402 , HOH D:403
BINDING SITE FOR RESIDUE CA D 303
12
CC4
SOFTWARE
ASN C:181 , GLN C:183 , ASN C:185 , NAG C:305 , HOH C:492 , GLY D:164 , LEU D:165 , TYR D:187 , TRP D:202 , HOH D:446
BINDING SITE FOR RESIDUE NDG D 304
13
DC2
SOFTWARE
ASP C:7 , GLY C:8 , LYS F:11 , ASN F:25 , ASN F:27 , THR F:59 , NAG F:302 , HOH F:500
BINDING SITE FOR RESIDUE NAG F 301
14
DC3
SOFTWARE
VAL C:5 , NAG F:301
BINDING SITE FOR RESIDUE NAG F 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (471 KB)
Header - Asym.Unit
Biol.Unit 1 (158 KB)
Header - Biol.Unit 1
Biol.Unit 2 (158 KB)
Header - Biol.Unit 2
Biol.Unit 3 (158 KB)
Header - Biol.Unit 3
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