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4RUK
Biol. Unit 1
Info
Asym.Unit (175 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOAPANTETHEINE ADENYLYLTRANSFERASE PPAT/COAD WITH COA AND PYROPHOSPHATE FROM PSEUDOMONAS AERUGINOSA
Authors
:
R. Chatterjee, S. Datta
Date
:
20 Nov 14 (Deposition) - 25 Nov 15 (Release) - 04 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,F (1x)
Biol. Unit 2: B,D,E (1x)
Keywords
:
Rossmann Fold, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Chatterjee, A. Mondal, A. Basu, S. Datta
Transition Of Phosphopantetheine Adenylyltransferase From Catalytic To Allosteric State Is Characterized By Ternary Complex Formation In Pseudomonas Aeruginosa
Biochim. Biophys. Acta V. 1864 773 2016
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: COENZYME A (COAa)
3b: COENZYME A (COAb)
3c: COENZYME A (COAc)
3d: COENZYME A (COAd)
3e: COENZYME A (COAe)
3f: COENZYME A (COAf)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
4f: DIMETHYL SULFOXIDE (DMSf)
4g: DIMETHYL SULFOXIDE (DMSg)
4h: DIMETHYL SULFOXIDE (DMSh)
4i: DIMETHYL SULFOXIDE (DMSi)
5a: FORMIC ACID (FMTa)
5b: FORMIC ACID (FMTb)
5c: FORMIC ACID (FMTc)
5d: FORMIC ACID (FMTd)
5e: FORMIC ACID (FMTe)
5f: FORMIC ACID (FMTf)
5g: FORMIC ACID (FMTg)
5h: FORMIC ACID (FMTh)
5i: FORMIC ACID (FMTi)
5j: FORMIC ACID (FMTj)
5k: FORMIC ACID (FMTk)
5l: FORMIC ACID (FMTl)
5m: FORMIC ACID (FMTm)
5n: FORMIC ACID (FMTn)
5o: FORMIC ACID (FMTo)
6a: GLYCEROL (GOLa)
7a: PYROPHOSPHATE 2- (POPa)
7b: PYROPHOSPHATE 2- (POPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
COA
3
Ligand/Ion
COENZYME A
4
DMS
6
Ligand/Ion
DIMETHYL SULFOXIDE
5
FMT
6
Ligand/Ion
FORMIC ACID
6
GOL
-1
Ligand/Ion
GLYCEROL
7
POP
1
Ligand/Ion
PYROPHOSPHATE 2-
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:7 , GLY A:8 , THR A:9 , HIS A:17 , LYS A:41 , LEU A:72 , LEU A:73 , ARG A:87 , ARG A:90 , TYR A:97 , LEU A:101 , SER A:127 , SER A:128 , THR A:129 , ARG A:132 , DMS A:204 , DMS A:205 , ACT A:208 , HOH A:320 , HOH A:321 , LEU F:130 , GLU F:133
BINDING SITE FOR RESIDUE COA A 201
02
AC2
SOFTWARE
LYS A:15 , ASP A:19 , TYR A:123
BINDING SITE FOR RESIDUE DMS A 202
03
AC3
SOFTWARE
ALA A:135 , GLY A:138 , GLY A:139 , ASP A:140 , ILE A:141
BINDING SITE FOR RESIDUE DMS A 203
04
AC4
SOFTWARE
ALA A:36 , ALA A:37 , SER A:38 , PHE A:69 , THR A:71 , COA A:201 , HOH A:317 , LEU F:137
BINDING SITE FOR RESIDUE DMS A 204
05
AC5
SOFTWARE
GLY A:16 , ARG A:90 , COA A:201 , ACT A:208
BINDING SITE FOR RESIDUE DMS A 205
06
AC6
SOFTWARE
ASP A:140
BINDING SITE FOR RESIDUE FMT A 206
07
AC7
SOFTWARE
TYR A:6 , PRO A:7 , ARG A:87 , GLY A:88 , COA A:201 , DMS A:205
BINDING SITE FOR RESIDUE ACT A 208
08
BC5
SOFTWARE
LEU A:130 , GLU A:133 , LEU A:137 , GLY C:8 , THR C:9 , LYS C:41 , PHE C:69 , LEU C:72 , LEU C:73 , ARG C:87 , TYR C:97 , LEU C:101 , SER C:127 , SER C:128 , THR C:129 , HOH C:305
BINDING SITE FOR RESIDUE COA C 201
09
BC6
SOFTWARE
LYS C:81 , ALA C:82
BINDING SITE FOR RESIDUE FMT C 202
10
BC7
SOFTWARE
LYS C:15 , GLY C:18 , ASP C:19 , HOH C:317
BINDING SITE FOR RESIDUE FMT C 203
11
BC8
SOFTWARE
GLU C:65 , GLN C:80
BINDING SITE FOR RESIDUE FMT C 204
12
BC9
SOFTWARE
ASN C:83 , ASP C:111 , ARG D:26
BINDING SITE FOR RESIDUE FMT C 205
13
CC1
SOFTWARE
TYR C:6 , HIS C:17 , ARG C:87 , GLY C:88 , ARG C:90
BINDING SITE FOR RESIDUE ACT C 206
14
DC5
SOFTWARE
LEU C:130 , LEU C:137 , PRO F:7 , GLY F:8 , THR F:9 , PHE F:10 , HIS F:17 , ALA F:36 , ALA F:37 , SER F:38 , LYS F:41 , PHE F:69 , SER F:70 , THR F:71 , LEU F:72 , LEU F:73 , ARG F:87 , TYR F:97 , LEU F:101 , SER F:127 , SER F:128 , THR F:129 , CA F:203 , ACT F:206 , HOH F:305 , HOH F:310 , HOH F:318
BINDING SITE FOR RESIDUE COA F 201
15
DC6
SOFTWARE
LYS F:15 , GLY F:18 , ASP F:19 , GLU F:22 , VAL F:57
BINDING SITE FOR RESIDUE POP F 202
16
DC7
SOFTWARE
HIS F:17 , SER F:128 , COA F:201 , HOH F:314
BINDING SITE FOR RESIDUE CA F 203
17
DC8
SOFTWARE
ARG B:26 , ASN F:83 , ASP F:111
BINDING SITE FOR RESIDUE DMS F 204
18
DC9
SOFTWARE
MET F:1 , ARG F:3 , LYS F:81
BINDING SITE FOR RESIDUE DMS F 205
19
EC1
SOFTWARE
TYR F:6 , ARG F:87 , GLY F:88 , ARG F:90 , COA F:201
BINDING SITE FOR RESIDUE ACT F 206
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (175 KB)
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Header - Biol.Unit 1
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