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4RMO
Biol. Unit 3
Info
Asym.Unit (414 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CPTIN TYPE III TOXIN-ANTITOXIN SYSTEM FROM EUBACTERIUM RECTALE
Authors
:
F. Rao, J. E. Voss, F. L. Short, B. F. Luisi
Date
:
21 Oct 14 (Deposition) - 30 Sep 15 (Release) - 18 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Protein-Rna Complex, Pseudoknot, Rna Twist, Toxin-Antitoxin, Type Iii, Bacteriophage Resistance, Toxin-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Rao, F. L. Short, J. E. Voss, T. R. Blower, A. L. Orme, T. E. Whittaker, B. F. Luisi, G. P. Salmond
Co-Evolution Of Quaternary Organization And Novel Rna Tertiary Interactions Revealed In The Crystal Structure Of Bacterial Protein-Rna Toxin-Antitoxin System.
Nucleic Acids Res. V. 43 9529 2015
[
close entry info
]
Hetero Components
(2, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23a)
1b: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23b)
1c: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23c)
1d: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23d)
1e: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23e)
1f: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23f)
1g: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23g)
1h: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23h)
2a: CALCIUM ION (CAa)
2aa: CALCIUM ION (CAaa)
2ab: CALCIUM ION (CAab)
2ac: CALCIUM ION (CAac)
2ad: CALCIUM ION (CAad)
2ae: CALCIUM ION (CAae)
2af: CALCIUM ION (CAaf)
2ag: CALCIUM ION (CAag)
2ah: CALCIUM ION (CAah)
2ai: CALCIUM ION (CAai)
2aj: CALCIUM ION (CAaj)
2ak: CALCIUM ION (CAak)
2al: CALCIUM ION (CAal)
2am: CALCIUM ION (CAam)
2an: CALCIUM ION (CAan)
2ao: CALCIUM ION (CAao)
2ap: CALCIUM ION (CAap)
2aq: CALCIUM ION (CAaq)
2ar: CALCIUM ION (CAar)
2as: CALCIUM ION (CAas)
2at: CALCIUM ION (CAat)
2au: CALCIUM ION (CAau)
2av: CALCIUM ION (CAav)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
2y: CALCIUM ION (CAy)
2z: CALCIUM ION (CAz)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A23
2
Mod. Nucleotide
ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: CC7 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC7
SOFTWARE
U H:43 , HOH H:270 , HOH H:273 , HOH H:298 , HOH H:300 , HOH J:230
BINDING SITE FOR RESIDUE CA H 106
02
CC8
SOFTWARE
ASP I:80 , HOH I:379 , A L:14 , HOH L:205 , HOH L:228 , HOH L:268
BINDING SITE FOR RESIDUE CA I 201
03
CC9
SOFTWARE
U J:19 , HOH J:203 , HOH J:285
BINDING SITE FOR RESIDUE CA J 101
04
DC1
SOFTWARE
HOH J:201 , HOH J:222 , HOH J:255
BINDING SITE FOR RESIDUE CA J 102
05
DC2
SOFTWARE
G J:24 , HOH J:205 , HOH J:206 , HOH J:211 , HOH J:228 , HOH J:237 , HOH J:286
BINDING SITE FOR RESIDUE CA J 103
06
DC3
SOFTWARE
G J:13 , HOH J:242 , HOH J:246 , HOH J:272 , HOH J:281
BINDING SITE FOR RESIDUE CA J 104
07
DC4
SOFTWARE
G J:41 , HOH J:209 , HOH J:210 , HOH J:241 , HOH J:276 , HOH J:277
BINDING SITE FOR RESIDUE CA J 105
08
DC5
SOFTWARE
A J:7 , HOH J:247 , HOH J:293 , HOH J:294
BINDING SITE FOR RESIDUE CA J 106
09
DC6
SOFTWARE
A J:14 , HOH J:297 , HOH J:298 , HOH J:299 , ASP K:80 , HOH K:325
BINDING SITE FOR RESIDUE CA K 201
10
DC7
SOFTWARE
HOH L:201 , HOH L:214 , HOH L:275
BINDING SITE FOR RESIDUE CA L 101
11
DC8
SOFTWARE
U L:19 , HOH L:229 , HOH L:277
BINDING SITE FOR RESIDUE CA L 102
12
DC9
SOFTWARE
U L:34 , G L:35 , HOH L:204 , HOH L:206 , HOH L:234 , HOH L:252 , HOH L:276
BINDING SITE FOR RESIDUE CA L 103
13
EC1
SOFTWARE
G L:41 , HOH L:207 , HOH L:208 , HOH L:209 , HOH L:269
BINDING SITE FOR RESIDUE CA L 104
14
EC2
SOFTWARE
G L:13 , G L:17 , HOH L:210 , HOH L:212
BINDING SITE FOR RESIDUE CA L 105
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (414 KB)
Header - Asym.Unit
Biol.Unit 1 (105 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (105 KB)
Header - Biol.Unit 3
Biol.Unit 4 (104 KB)
Header - Biol.Unit 4
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