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4RMO
Biol. Unit 1
Info
Asym.Unit (414 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CPTIN TYPE III TOXIN-ANTITOXIN SYSTEM FROM EUBACTERIUM RECTALE
Authors
:
F. Rao, J. E. Voss, F. L. Short, B. F. Luisi
Date
:
21 Oct 14 (Deposition) - 30 Sep 15 (Release) - 18 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Protein-Rna Complex, Pseudoknot, Rna Twist, Toxin-Antitoxin, Type Iii, Bacteriophage Resistance, Toxin-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Rao, F. L. Short, J. E. Voss, T. R. Blower, A. L. Orme, T. E. Whittaker, B. F. Luisi, G. P. Salmond
Co-Evolution Of Quaternary Organization And Novel Rna Tertiary Interactions Revealed In The Crystal Structure Of Bacterial Protein-Rna Toxin-Antitoxin System.
Nucleic Acids Res. V. 43 9529 2015
[
close entry info
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23a)
1b: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23b)
1c: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23c)
1d: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23d)
1e: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23e)
1f: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23f)
1g: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23g)
1h: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23h)
2a: CALCIUM ION (CAa)
2aa: CALCIUM ION (CAaa)
2ab: CALCIUM ION (CAab)
2ac: CALCIUM ION (CAac)
2ad: CALCIUM ION (CAad)
2ae: CALCIUM ION (CAae)
2af: CALCIUM ION (CAaf)
2ag: CALCIUM ION (CAag)
2ah: CALCIUM ION (CAah)
2ai: CALCIUM ION (CAai)
2aj: CALCIUM ION (CAaj)
2ak: CALCIUM ION (CAak)
2al: CALCIUM ION (CAal)
2am: CALCIUM ION (CAam)
2an: CALCIUM ION (CAan)
2ao: CALCIUM ION (CAao)
2ap: CALCIUM ION (CAap)
2aq: CALCIUM ION (CAaq)
2ar: CALCIUM ION (CAar)
2as: CALCIUM ION (CAas)
2at: CALCIUM ION (CAat)
2au: CALCIUM ION (CAau)
2av: CALCIUM ION (CAav)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
2y: CALCIUM ION (CAy)
2z: CALCIUM ION (CAz)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A23
2
Mod. Nucleotide
ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:80 , HOH A:381 , A F:14 , HOH F:220 , HOH F:222 , HOH F:223
BINDING SITE FOR RESIDUE CA A 201
02
AC2
SOFTWARE
U B:19 , HOH B:213 , HOH B:245 , HOH B:285
BINDING SITE FOR RESIDUE CA B 101
03
AC3
SOFTWARE
G B:13 , HOH B:203 , HOH B:233 , HOH B:244 , HOH B:260 , HOH B:277 , HOH B:281
BINDING SITE FOR RESIDUE CA B 102
04
AC4
SOFTWARE
G B:41 , HOH B:201 , HOH B:223 , HOH B:237 , HOH B:272 , HOH B:276
BINDING SITE FOR RESIDUE CA B 103
05
AC5
SOFTWARE
HOH B:202 , HOH B:275 , HOH B:288 , HOH B:289 , HOH B:298 , HOH B:299
BINDING SITE FOR RESIDUE CA B 104
06
AC6
SOFTWARE
A B:31 , A B:32 , HOH B:236 , HOH B:293 , HOH B:294
BINDING SITE FOR RESIDUE CA B 105
07
BC5
SOFTWARE
A B:14 , HOH B:215 , HOH B:216 , HOH B:231 , ASP E:80 , HOH E:301 , HOH E:302
BINDING SITE FOR RESIDUE CA E 201
08
BC6
SOFTWARE
U F:19 , HOH F:214
BINDING SITE FOR RESIDUE CA F 101
09
BC7
SOFTWARE
G F:13 , G F:17 , HOH F:205 , HOH F:221 , HOH F:244
BINDING SITE FOR RESIDUE CA F 102
10
BC8
SOFTWARE
HOH A:379 , G F:41 , HOH F:203 , HOH F:204
BINDING SITE FOR RESIDUE CA F 103
11
BC9
SOFTWARE
U F:34 , G F:35 , HOH F:202 , HOH F:232 , HOH F:234 , HOH F:252
BINDING SITE FOR RESIDUE CA F 104
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (414 KB)
Header - Asym.Unit
Biol.Unit 1 (105 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (105 KB)
Header - Biol.Unit 3
Biol.Unit 4 (104 KB)
Header - Biol.Unit 4
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