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4RL8
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COG4313 OUTER MEMBRANE CHANNEL FROM PSEUDOMONAS PUTIDA F1
Authors
:
B. Van Den Berg
Date
:
16 Oct 14 (Deposition) - 29 Jul 15 (Release) - 29 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta Barrel, Channel, Bacterial Outer Membrane, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. V. Berg, S. P. Bhamidimarri, M. Winterhalter
Crystal Structure Of A Cog4313 Outer Membrane Channel.
Sci Rep V. 5 11927 2015
[
close entry info
]
Hetero Components
(2, 29)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1aa: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eaa)
1ab: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eab)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
1x: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ex)
1y: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ey)
1z: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ez)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
28
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:104 , ASP A:108 , TYR A:144 , TRP D:152
BINDING SITE FOR RESIDUE C8E A 301
02
AC2
SOFTWARE
ASP A:7 , ARG A:51 , PHE A:233
BINDING SITE FOR RESIDUE C8E A 303
03
AC3
SOFTWARE
VAL A:20
BINDING SITE FOR RESIDUE C8E A 304
04
AC4
SOFTWARE
PRO A:66
BINDING SITE FOR RESIDUE C8E A 305
05
AC5
SOFTWARE
PRO A:119
BINDING SITE FOR RESIDUE C8E A 306
06
AC6
SOFTWARE
ALA A:230 , LYS A:232 , LEU A:240 , HOH A:457 , HOH A:478 , SER C:172 , ASP C:213 , C8E C:306
BINDING SITE FOR RESIDUE C8E A 307
07
AC7
SOFTWARE
VAL A:157 , GLY A:158 , ASP A:159 , GLY A:183
BINDING SITE FOR RESIDUE C8E A 308
08
AC8
SOFTWARE
VAL A:90 , PHE C:72 , GLY C:73
BINDING SITE FOR RESIDUE C8E A 309
09
AC9
SOFTWARE
HIS A:54 , TYR A:56 , LEU C:198 , PHE C:234
BINDING SITE FOR RESIDUE C8E A 310
10
BC1
SOFTWARE
HIS A:35 , LYS A:36 , GLY B:34 , HIS B:35 , LYS B:36
BINDING SITE FOR RESIDUE PO4 A 311
11
BC2
SOFTWARE
PHE B:233
BINDING SITE FOR RESIDUE C8E B 301
12
BC3
SOFTWARE
ASN B:104 , ASP B:108 , TYR B:144 , GLY B:158 , ASP B:159 , TRP C:152
BINDING SITE FOR RESIDUE C8E B 302
13
BC4
SOFTWARE
ALA B:230 , LYS B:232 , ASP D:213
BINDING SITE FOR RESIDUE C8E B 303
14
BC5
SOFTWARE
GLY B:18 , VAL D:20 , LEU D:262
BINDING SITE FOR RESIDUE C8E B 305
15
BC6
SOFTWARE
HIS C:54 , GLN C:67 , PHE C:68 , LEU C:95 , THR C:96 , VAL C:114
BINDING SITE FOR RESIDUE C8E C 301
16
BC7
SOFTWARE
PHE C:233
BINDING SITE FOR RESIDUE C8E C 302
17
BC8
SOFTWARE
PHE C:1 , ILE C:49 , THR C:94
BINDING SITE FOR RESIDUE C8E C 303
18
BC9
SOFTWARE
ALA C:97 , ALA C:112 , LEU C:140 , GLN C:141 , ASP C:159 , C8E C:305
BINDING SITE FOR RESIDUE C8E C 304
19
CC1
SOFTWARE
LEU C:156 , VAL C:157 , GLY C:158 , LEU C:186 , HIS C:204 , C8E C:304
BINDING SITE FOR RESIDUE C8E C 305
20
CC2
SOFTWARE
C8E A:307 , THR C:215 , GLN C:217 , TYR D:182
BINDING SITE FOR RESIDUE C8E C 306
21
CC3
SOFTWARE
ALA D:142 , LEU D:156 , VAL D:157 , GLY D:158 , TRP D:206
BINDING SITE FOR RESIDUE C8E D 301
22
CC4
SOFTWARE
LEU B:70 , VAL B:90 , GLY D:48 , PHE D:72
BINDING SITE FOR RESIDUE C8E D 302
23
CC5
SOFTWARE
ALA D:97 , ALA D:112 , VAL D:114
BINDING SITE FOR RESIDUE C8E D 303
24
CC6
SOFTWARE
HIS D:204
BINDING SITE FOR RESIDUE C8E D 304
25
CC7
SOFTWARE
ARG D:51 , PHE D:233
BINDING SITE FOR RESIDUE C8E D 305
26
CC8
SOFTWARE
TRP B:136 , ARG D:246 , ASN D:257 , PHE D:258
BINDING SITE FOR RESIDUE C8E D 306
27
CC9
SOFTWARE
PHE D:1 , PRO D:71 , TYR D:115 , ASP D:139
BINDING SITE FOR RESIDUE C8E D 307
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Chain D
Asymmetric Unit 1
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Example Commands
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (184 KB)
Header - Asym.Unit
Biol.Unit 1 (47 KB)
Header - Biol.Unit 1
Biol.Unit 2 (47 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
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