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4RKN
Biol. Unit 1
Info
Asym.Unit (509 KB)
Biol.Unit 1 (365 KB)
Biol.Unit 2 (370 KB)
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(1)
Title
:
WOLINELLA SUCCINOGENES OCTAHEME SULFITE REDUCTASE MCCA, FORM II
Authors
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
Date
:
13 Oct 14 (Deposition) - 04 Feb 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D (3x)
Keywords
:
Multiheme Cytochrome C, Sulfite Reductase, Periplasmic, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
The Octahaem Mcca Is A Haem C-Copper Sulfite Reductase.
Nature V. 520 706 2015
[
close entry info
]
Hetero Components
(3, 31)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
2a: DITHIONITE (DTNa)
2b: DITHIONITE (DTNb)
2c: DITHIONITE (DTNc)
2d: DITHIONITE (DTNd)
2e: DITHIONITE (DTNe)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
3ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
3ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
3ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
3ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
3af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
3i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
3j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
3k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
3l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
3n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
3o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
3r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
3t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
3v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
3w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
3x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
3y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
3z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
4a: SULFITE ION (SO3a)
4b: SULFITE ION (SO3b)
4c: SULFITE ION (SO3c)
4d: SULFITE ION (SO3d)
4e: SULFITE ION (SO3e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
DTN
4
Ligand/Ion
DITHIONITE
3
HEM
24
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
SO3
3
Ligand/Ion
SULFITE ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:394 , TYR A:499 , ARG A:539 , ASP A:540
BINDING SITE FOR RESIDUE DTN A 901
02
AC2
SOFTWARE
CYS A:143 , CYS A:146 , HIS A:147 , HIS A:343 , GLY A:346 , GLY A:347 , HIS A:348 , HEM A:904 , HOH A:1079 , HOH A:1172 , ARG C:124 , VAL C:125 , ALA C:126 , ILE C:357 , SER C:358 , ASN C:359 , CYS C:360 , GLU C:361 , ARG C:362 , HOH C:1082
BINDING SITE FOR RESIDUE HEM A 902
03
AC3
SOFTWARE
TYR A:123 , ARG A:158 , VAL A:202 , GLY A:203 , HIS A:204 , ARG A:206 , THR A:207 , LYS A:208 , ARG A:218 , TYR A:301 , CYS A:302 , CYS A:305 , HIS A:306 , CYS A:363 , HIS A:364 , ARG A:366 , CYS A:399 , GLY A:400 , GLU A:402 , CYS A:495 , ARG A:513 , HEM A:905 , HEM A:906 , CU A:910 , SO3 A:912
BINDING SITE FOR RESIDUE HEM A 903
04
AC4
SOFTWARE
HIS A:147 , GLN A:150 , TYR A:151 , TRP A:154 , HIS A:159 , VAL A:337 , SER A:338 , CYS A:339 , CYS A:342 , HIS A:343 , ILE A:357 , SER A:358 , PRO A:424 , HIS A:425 , LYS A:459 , HEM A:902 , HEM A:905 , HOH A:1031 , HOH A:1123 , HOH A:1168 , HOH A:1171 , ASN C:359 , GLU C:361 , ARG C:417
BINDING SITE FOR RESIDUE HEM A 904
05
AC5
SOFTWARE
ARG A:158 , HIS A:159 , THR A:162 , HIS A:204 , VAL A:304 , CYS A:305 , HIS A:306 , VAL A:337 , SER A:358 , CYS A:360 , CYS A:363 , HIS A:364 , VAL A:427 , THR A:428 , SER A:454 , ARG A:513 , HEM A:903 , HEM A:904 , HEM A:906
BINDING SITE FOR RESIDUE HEM A 905
06
AC6
SOFTWARE
ARG A:206 , HIS A:364 , GLU A:402 , GLY A:403 , ARG A:417 , CYS A:418 , CYS A:421 , HIS A:422 , SER A:454 , LYS A:455 , PRO A:456 , LEU A:458 , PHE A:491 , ARG A:513 , ARG A:514 , HIS A:516 , HEM A:903 , HEM A:905 , HOH A:1007 , HOH A:1026 , HOH A:1108
BINDING SITE FOR RESIDUE HEM A 906
07
AC7
SOFTWARE
HIS A:411 , MET A:416 , CYS A:462 , CYS A:465 , HIS A:466 , HIS A:488 , TRP A:518 , LYS A:519 , ARG A:553 , HEM A:908 , HOH A:1001 , HOH A:1032 , HOH A:1087 , HOH A:1255 , HOH A:1332
BINDING SITE FOR RESIDUE HEM A 907
08
AC8
SOFTWARE
CYS A:462 , HIS A:466 , GLN A:473 , HIS A:479 , CYS A:484 , CYS A:487 , HIS A:488 , GLN A:606 , ASP A:657 , GLY A:658 , TRP A:660 , HIS A:663 , HEM A:907 , HOH A:1005 , HOH A:1039 , HOH A:1052 , HOH A:1163 , HOH A:1165 , HOH A:1229 , HOH A:1255
BINDING SITE FOR RESIDUE HEM A 908
09
AC9
SOFTWARE
THR A:478 , HIS A:479 , ASN A:482 , SER A:486 , ALA A:561 , CYS A:562 , ALA A:575 , CYS A:578 , HIS A:579 , GLU A:601 , VAL A:602 , TRP A:605
BINDING SITE FOR RESIDUE HEM A 909
10
BC1
SOFTWARE
CYS A:399 , CYS A:495 , HEM A:903 , SO3 A:912
BINDING SITE FOR RESIDUE CU A 910
11
BC2
SOFTWARE
TYR A:624 , ILE A:644 , GLU A:645 , GLN A:648 , HOH A:1041 , HOH A:1117 , LYS B:475 , TYR B:667 , HOH B:1229
BINDING SITE FOR RESIDUE DTN A 911
12
BC3
SOFTWARE
LYS A:208 , TYR A:285 , ARG A:366 , LYS A:393 , CYS A:399 , CYS A:495 , HEM A:903 , CU A:910 , HOH A:1327
BINDING SITE FOR RESIDUE SO3 A 912
13
BC4
SOFTWARE
LYS B:288 , SER B:394 , TYR B:499 , ASP B:540 , HOH B:1172
BINDING SITE FOR RESIDUE DTN B 901
14
BC5
SOFTWARE
ARG A:124 , VAL A:125 , ALA A:126 , ILE A:357 , SER A:358 , ASN A:359 , CYS A:360 , GLU A:361 , ARG A:362 , HOH A:1067 , CYS B:143 , CYS B:146 , HIS B:147 , HIS B:343 , GLY B:346 , GLY B:347 , HIS B:348 , LEU B:349 , HEM B:904 , HOH B:1046 , HOH B:1105
BINDING SITE FOR RESIDUE HEM B 902
15
BC6
SOFTWARE
TYR B:123 , ARG B:158 , VAL B:202 , GLY B:203 , HIS B:204 , ARG B:206 , THR B:207 , LYS B:208 , ARG B:218 , TYR B:301 , CYS B:302 , CYS B:305 , HIS B:306 , CYS B:363 , HIS B:364 , ARG B:366 , CYS B:399 , GLY B:400 , GLU B:402 , CYS B:495 , ARG B:513 , HEM B:905 , HEM B:906 , CU B:910 , SO3 B:911
BINDING SITE FOR RESIDUE HEM B 903
16
BC7
SOFTWARE
ASN A:359 , GLU A:361 , ARG A:417 , HIS B:147 , GLN B:150 , TYR B:151 , HIS B:159 , VAL B:337 , SER B:338 , CYS B:339 , CYS B:342 , HIS B:343 , SER B:358 , ALA B:419 , PRO B:424 , HIS B:425 , LYS B:459 , HEM B:902 , HEM B:905 , HOH B:1023 , HOH B:1075 , HOH B:1111 , HOH B:1137
BINDING SITE FOR RESIDUE HEM B 904
17
BC8
SOFTWARE
ARG B:158 , HIS B:159 , THR B:162 , HIS B:204 , CYS B:305 , HIS B:306 , VAL B:337 , SER B:358 , CYS B:360 , CYS B:363 , HIS B:364 , VAL B:427 , THR B:428 , SER B:454 , ARG B:513 , HEM B:903 , HEM B:904 , HEM B:906
BINDING SITE FOR RESIDUE HEM B 905
18
BC9
SOFTWARE
ARG B:206 , HIS B:364 , GLU B:402 , GLY B:403 , MET B:416 , ARG B:417 , CYS B:418 , CYS B:421 , HIS B:422 , SER B:454 , LYS B:455 , LEU B:458 , MET B:489 , PHE B:491 , ARG B:513 , ARG B:514 , HIS B:516 , HEM B:903 , HEM B:905 , HEM B:907 , HOH B:1041 , HOH B:1117 , HOH B:1130 , HOH B:1231
BINDING SITE FOR RESIDUE HEM B 906
19
CC1
SOFTWARE
HIS B:411 , MET B:416 , LYS B:460 , GLU B:461 , CYS B:462 , CYS B:465 , HIS B:466 , HIS B:488 , TRP B:518 , ARG B:553 , HEM B:906 , HEM B:908 , HOH B:1008 , HOH B:1030 , HOH B:1142 , HOH B:1273
BINDING SITE FOR RESIDUE HEM B 907
20
CC2
SOFTWARE
CYS B:462 , HIS B:466 , GLN B:469 , GLN B:473 , HIS B:479 , CYS B:484 , CYS B:487 , HIS B:488 , VAL B:522 , GLN B:606 , ASP B:657 , GLY B:658 , HIS B:663 , HEM B:907 , HOH B:1021 , HOH B:1085 , HOH B:1121 , HOH B:1134 , HOH B:1167 , HOH B:1244 , HOH B:1272
BINDING SITE FOR RESIDUE HEM B 908
21
CC3
SOFTWARE
THR B:478 , HIS B:479 , ASN B:482 , ALA B:561 , CYS B:562 , ALA B:575 , CYS B:578 , HIS B:579 , LEU B:590 , VAL B:602 , TRP B:605
BINDING SITE FOR RESIDUE HEM B 909
22
CC4
SOFTWARE
CYS B:399 , CYS B:495 , HEM B:903 , SO3 B:911
BINDING SITE FOR RESIDUE CU B 910
23
CC5
SOFTWARE
LYS B:208 , TYR B:285 , ARG B:366 , LYS B:393 , CYS B:399 , CYS B:495 , HEM B:903 , CU B:910 , HOH B:1351
BINDING SITE FOR RESIDUE SO3 B 911
24
CC6
SOFTWARE
LYS C:288 , SER C:394 , TYR C:499 , ASP C:540
BINDING SITE FOR RESIDUE DTN C 901
25
CC7
SOFTWARE
ARG B:124 , VAL B:125 , ALA B:126 , ILE B:357 , SER B:358 , ASN B:359 , CYS B:360 , GLU B:361 , ARG B:362 , HOH B:1019 , CYS C:143 , CYS C:146 , HIS C:147 , HIS C:343 , GLY C:346 , GLY C:347 , HIS C:348 , LEU C:349 , HEM C:904 , HOH C:1023
BINDING SITE FOR RESIDUE HEM C 902
26
CC8
SOFTWARE
TYR C:123 , ARG C:158 , VAL C:202 , GLY C:203 , HIS C:204 , ARG C:206 , THR C:207 , LYS C:208 , PHE C:212 , ARG C:218 , TYR C:301 , CYS C:302 , CYS C:305 , HIS C:306 , CYS C:363 , HIS C:364 , ARG C:366 , CYS C:399 , GLY C:400 , GLU C:402 , CYS C:495 , ARG C:513 , HEM C:905 , HEM C:906 , CU C:910 , SO3 C:911
BINDING SITE FOR RESIDUE HEM C 903
27
CC9
SOFTWARE
ASN B:359 , GLU B:361 , ARG B:417 , HOH B:1053 , HIS C:147 , GLN C:150 , TYR C:151 , TRP C:154 , HIS C:159 , VAL C:337 , SER C:338 , CYS C:339 , CYS C:342 , HIS C:343 , ILE C:357 , SER C:358 , PRO C:424 , HIS C:425 , LYS C:459 , HEM C:902 , HEM C:905 , HOH C:1015 , HOH C:1084 , HOH C:1145 , HOH C:1234
BINDING SITE FOR RESIDUE HEM C 904
28
DC1
SOFTWARE
ARG C:158 , HIS C:159 , THR C:162 , HIS C:204 , VAL C:304 , CYS C:305 , HIS C:306 , VAL C:337 , SER C:358 , CYS C:360 , CYS C:363 , HIS C:364 , VAL C:427 , THR C:428 , SER C:454 , ARG C:513 , HEM C:903 , HEM C:904 , HEM C:906
BINDING SITE FOR RESIDUE HEM C 905
29
DC2
SOFTWARE
ARG C:206 , HIS C:364 , GLU C:402 , GLY C:403 , MET C:416 , ARG C:417 , CYS C:418 , CYS C:421 , HIS C:422 , SER C:454 , LYS C:455 , PRO C:456 , LEU C:458 , MET C:489 , PHE C:491 , ARG C:513 , ARG C:514 , HIS C:516 , HEM C:903 , HEM C:905 , HEM C:907 , HOH C:1017 , HOH C:1097 , HOH C:1182
BINDING SITE FOR RESIDUE HEM C 906
30
DC3
SOFTWARE
HIS C:411 , MET C:416 , LYS C:460 , CYS C:462 , CYS C:465 , HIS C:466 , HIS C:488 , TRP C:518 , LYS C:519 , ARG C:553 , HEM C:906 , HEM C:908 , HOH C:1003 , HOH C:1031 , HOH C:1209
BINDING SITE FOR RESIDUE HEM C 907
31
DC4
SOFTWARE
CYS C:462 , HIS C:466 , GLN C:473 , HIS C:479 , CYS C:484 , CYS C:487 , HIS C:488 , GLN C:606 , ASP C:657 , GLY C:658 , HIS C:663 , HEM C:907 , HOH C:1124 , HOH C:1126 , HOH C:1128 , HOH C:1206 , HOH C:1236 , HOH C:1303 , HOH C:1311
BINDING SITE FOR RESIDUE HEM C 908
32
DC5
SOFTWARE
THR C:478 , HIS C:479 , ASN C:482 , ALA C:561 , CYS C:562 , ALA C:575 , CYS C:578 , HIS C:579 , GLU C:601 , VAL C:602 , TRP C:605
BINDING SITE FOR RESIDUE HEM C 909
33
DC6
SOFTWARE
CYS C:399 , CYS C:495 , HEM C:903 , SO3 C:911
BINDING SITE FOR RESIDUE CU C 910
34
DC7
SOFTWARE
LYS C:208 , TYR C:285 , ARG C:366 , LYS C:393 , CYS C:399 , CYS C:495 , HEM C:903 , CU C:910 , HOH C:1308
BINDING SITE FOR RESIDUE SO3 C 911
35
DC8
SOFTWARE
THR B:232 , LYS D:288 , SER D:394 , TYR D:499 , ASP D:540 , GLY D:541 , HOH D:1309 , HOH D:1312
BINDING SITE FOR RESIDUE DTN D 901
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