PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4RKM
Biol. Unit 3
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (376 KB)
Biol.Unit 2 (373 KB)
Biol.Unit 3 (371 KB)
Biol.Unit 4 (369 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
WOLINELLA SUCCINOGENES OCTAHEME SULFITE REDUCTASE MCCA, FORM I
Authors
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
Date
:
13 Oct 14 (Deposition) - 04 Feb 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,K (1x)
Biol. Unit 3: F,I,J (1x)
Biol. Unit 4: G,H,L (1x)
Keywords
:
Multiheme Cytochrome C, Sulfite Reductase, Periplasmic, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
The Octahaem Mcca Is A Haem C-Copper Sulfite Reductase.
Nature V. 520 706 2015
[
close entry info
]
Hetero Components
(5, 38)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
2a: (R,R)-2,3-BUTANEDIOL (BU3a)
2aa: (R,R)-2,3-BUTANEDIOL (BU3aa)
2b: (R,R)-2,3-BUTANEDIOL (BU3b)
2c: (R,R)-2,3-BUTANEDIOL (BU3c)
2d: (R,R)-2,3-BUTANEDIOL (BU3d)
2e: (R,R)-2,3-BUTANEDIOL (BU3e)
2f: (R,R)-2,3-BUTANEDIOL (BU3f)
2g: (R,R)-2,3-BUTANEDIOL (BU3g)
2h: (R,R)-2,3-BUTANEDIOL (BU3h)
2i: (R,R)-2,3-BUTANEDIOL (BU3i)
2j: (R,R)-2,3-BUTANEDIOL (BU3j)
2k: (R,R)-2,3-BUTANEDIOL (BU3k)
2l: (R,R)-2,3-BUTANEDIOL (BU3l)
2m: (R,R)-2,3-BUTANEDIOL (BU3m)
2n: (R,R)-2,3-BUTANEDIOL (BU3n)
2o: (R,R)-2,3-BUTANEDIOL (BU3o)
2p: (R,R)-2,3-BUTANEDIOL (BU3p)
2q: (R,R)-2,3-BUTANEDIOL (BU3q)
2r: (R,R)-2,3-BUTANEDIOL (BU3r)
2s: (R,R)-2,3-BUTANEDIOL (BU3s)
2t: (R,R)-2,3-BUTANEDIOL (BU3t)
2u: (R,R)-2,3-BUTANEDIOL (BU3u)
2v: (R,R)-2,3-BUTANEDIOL (BU3v)
2w: (R,R)-2,3-BUTANEDIOL (BU3w)
2x: (R,R)-2,3-BUTANEDIOL (BU3x)
2y: (R,R)-2,3-BUTANEDIOL (BU3y)
2z: (R,R)-2,3-BUTANEDIOL (BU3z)
3a: COPPER (I) ION (CU1a)
3b: COPPER (I) ION (CU1b)
3c: COPPER (I) ION (CU1c)
3d: COPPER (I) ION (CU1d)
3e: COPPER (I) ION (CU1e)
3f: COPPER (I) ION (CU1f)
3g: COPPER (I) ION (CU1g)
3h: COPPER (I) ION (CU1h)
3i: COPPER (I) ION (CU1i)
3j: COPPER (I) ION (CU1j)
3k: COPPER (I) ION (CU1k)
3l: COPPER (I) ION (CU1l)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
4ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
4ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
4ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
4ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
4af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
4ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
4ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
4ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
4aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
4ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
4al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
4am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
4an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
4ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
4ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
4aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
4ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
4as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
4at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
4au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
4av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
4aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
4ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
4ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
4az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
4bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
4bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
4bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
4be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
4bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
4bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
4bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
4bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
4bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
4bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
4bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
4bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
4bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
4bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
4bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
4bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
4br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
4bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
4bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
4bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
4bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
4bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
4bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
4by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
4bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
4cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
4cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
4cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
4ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
4cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
4cg: PROTOPORPHYRIN IX CONTAINING FE (HEMcg)
4ch: PROTOPORPHYRIN IX CONTAINING FE (HEMch)
4ci: PROTOPORPHYRIN IX CONTAINING FE (HEMci)
4cj: PROTOPORPHYRIN IX CONTAINING FE (HEMcj)
4ck: PROTOPORPHYRIN IX CONTAINING FE (HEMck)
4cl: PROTOPORPHYRIN IX CONTAINING FE (HEMcl)
4cm: PROTOPORPHYRIN IX CONTAINING FE (HEMcm)
4cn: PROTOPORPHYRIN IX CONTAINING FE (HEMcn)
4co: PROTOPORPHYRIN IX CONTAINING FE (HEMco)
4cp: PROTOPORPHYRIN IX CONTAINING FE (HEMcp)
4cq: PROTOPORPHYRIN IX CONTAINING FE (HEMcq)
4cr: PROTOPORPHYRIN IX CONTAINING FE (HEMcr)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
4j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
4k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
4l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
4m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
4n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
4o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
4p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
4q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
4r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
4s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
4t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
4u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
4v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
4w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
4x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
4y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
4z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
5a: SULFUR DIOXIDE (SO2a)
5b: SULFUR DIOXIDE (SO2b)
5c: SULFUR DIOXIDE (SO2c)
5d: SULFUR DIOXIDE (SO2d)
6a: SULFUR OXIDE (SXa)
6b: SULFUR OXIDE (SXb)
6c: SULFUR OXIDE (SXc)
6d: SULFUR OXIDE (SXd)
6e: SULFUR OXIDE (SXe)
6f: SULFUR OXIDE (SXf)
6g: SULFUR OXIDE (SXg)
6h: SULFUR OXIDE (SXh)
6i: SULFUR OXIDE (SXi)
6j: SULFUR OXIDE (SXj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
BU3
7
Ligand/Ion
(R,R)-2,3-BUTANEDIOL
3
CU1
3
Ligand/Ion
COPPER (I) ION
4
HEM
24
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
SO2
1
Ligand/Ion
SULFUR DIOXIDE
6
SX
-1
Ligand/Ion
SULFUR OXIDE
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: BC4 (SOFTWARE)
02: CC1 (SOFTWARE)
03: HC5 (SOFTWARE)
04: HC6 (SOFTWARE)
05: HC7 (SOFTWARE)
06: HC8 (SOFTWARE)
07: HC9 (SOFTWARE)
08: IC1 (SOFTWARE)
09: IC2 (SOFTWARE)
10: IC3 (SOFTWARE)
11: IC4 (SOFTWARE)
12: IC5 (SOFTWARE)
13: IC6 (SOFTWARE)
14: IC7 (SOFTWARE)
15: IC8 (SOFTWARE)
16: IC9 (SOFTWARE)
17: KC6 (SOFTWARE)
18: KC7 (SOFTWARE)
19: KC8 (SOFTWARE)
20: KC9 (SOFTWARE)
21: LC1 (SOFTWARE)
22: LC2 (SOFTWARE)
23: LC3 (SOFTWARE)
24: LC4 (SOFTWARE)
25: LC5 (SOFTWARE)
26: LC6 (SOFTWARE)
27: LC7 (SOFTWARE)
28: LC8 (SOFTWARE)
29: LC9 (SOFTWARE)
30: MC1 (SOFTWARE)
31: MC2 (SOFTWARE)
32: MC3 (SOFTWARE)
33: MC4 (SOFTWARE)
34: MC5 (SOFTWARE)
35: MC6 (SOFTWARE)
36: MC7 (SOFTWARE)
37: MC8 (SOFTWARE)
38: MC9 (SOFTWARE)
39: NC1 (SOFTWARE)
40: NC2 (SOFTWARE)
41: NC3 (SOFTWARE)
42: NC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
THR A:478 , HIS A:479 , SER A:486 , ALA A:561 , CYS A:562 , ALA A:575 , CYS A:578 , HIS A:579 , LEU A:586 , VAL A:602 , TRP A:605 , HEM F:814
BINDING SITE FOR RESIDUE HEM A 813
02
CC1
SOFTWARE
GLN B:615 , GLY B:619 , GLN B:683 , GLN I:615 , VAL I:618 , GLN I:683
BINDING SITE FOR RESIDUE BU3 B 805
03
HC5
SOFTWARE
CYS F:399 , CYS F:495 , SX F:802 , HEM F:808
BINDING SITE FOR RESIDUE CU1 F 801
04
HC6
SOFTWARE
TYR F:285 , ARG F:366 , LYS F:393 , CYS F:399 , CU1 F:801 , HEM F:808 , HOH F:1086
BINDING SITE FOR RESIDUE SX F 802
05
HC7
SOFTWARE
ILE F:357 , HEM J:806 , HEM J:808 , HOH J:929
BINDING SITE FOR RESIDUE BU3 F 803
06
HC8
SOFTWARE
LYS F:288 , SER F:394 , ASP F:540
BINDING SITE FOR RESIDUE BU3 F 804
07
HC9
SOFTWARE
THR F:420
BINDING SITE FOR RESIDUE BU3 F 805
08
IC1
SOFTWARE
ASN F:359 , GLN F:365 , GLY F:403 , TYR F:412 , HOH F:1145
BINDING SITE FOR RESIDUE ACT F 806
09
IC2
SOFTWARE
CYS F:143 , CYS F:146 , HIS F:147 , CYS F:339 , GLU F:340 , HIS F:343 , HIS F:348 , HEM F:809 , HOH F:928 , ARG I:124 , VAL I:125 , ALA I:126 , ILE I:357 , SER I:358 , ASN I:359 , CYS I:360 , GLU I:361 , ARG I:362 , HOH I:915 , HOH I:967
BINDING SITE FOR RESIDUE HEM F 807
10
IC3
SOFTWARE
TYR F:123 , ARG F:158 , VAL F:202 , GLY F:203 , HIS F:204 , ARG F:206 , THR F:207 , LYS F:208 , ARG F:218 , TYR F:301 , CYS F:302 , CYS F:305 , HIS F:306 , CYS F:363 , HIS F:364 , CYS F:399 , GLY F:400 , GLU F:402 , ARG F:513 , CU1 F:801 , SX F:802 , HEM F:810 , HEM F:811
BINDING SITE FOR RESIDUE HEM F 808
11
IC4
SOFTWARE
HIS F:147 , TYR F:151 , TRP F:154 , HIS F:159 , VAL F:337 , CYS F:339 , CYS F:342 , HIS F:343 , SER F:358 , ALA F:419 , PRO F:424 , HIS F:425 , LYS F:459 , HEM F:807 , HEM F:810 , HOH F:1033 , HOH F:1064 , HOH F:1096 , HOH F:1097 , ASN I:359 , GLU I:361 , ARG I:417
BINDING SITE FOR RESIDUE HEM F 809
12
IC5
SOFTWARE
ARG F:158 , HIS F:159 , THR F:162 , HIS F:204 , VAL F:304 , CYS F:305 , HIS F:306 , VAL F:337 , CYS F:360 , CYS F:363 , HIS F:364 , VAL F:427 , THR F:428 , SER F:454 , ARG F:513 , HEM F:808 , HEM F:809 , HEM F:811
BINDING SITE FOR RESIDUE HEM F 810
13
IC6
SOFTWARE
ARG F:206 , HIS F:364 , GLU F:402 , GLY F:403 , HIS F:411 , MET F:416 , ARG F:417 , CYS F:418 , CYS F:421 , HIS F:422 , SER F:454 , LYS F:455 , PRO F:456 , LEU F:458 , PHE F:491 , ARG F:513 , ARG F:514 , HIS F:516 , TRP F:518 , HEM F:808 , HEM F:810 , HOH F:903 , HOH F:940 , HOH F:972 , HOH F:1008
BINDING SITE FOR RESIDUE HEM F 811
14
IC7
SOFTWARE
HIS F:411 , LYS F:414 , MET F:416 , LYS F:460 , CYS F:462 , CYS F:465 , HIS F:466 , HIS F:488 , TRP F:518 , ARG F:553 , HEM F:813 , HOH F:929 , HOH F:955 , HOH F:1000
BINDING SITE FOR RESIDUE HEM F 812
15
IC8
SOFTWARE
CYS F:462 , HIS F:466 , GLN F:469 , GLN F:473 , HIS F:479 , CYS F:484 , CYS F:487 , HIS F:488 , ILE F:520 , GLN F:606 , ASP F:657 , HIS F:663 , HEM F:812 , HOH F:901 , HOH F:902 , HOH F:946 , HOH F:949 , HOH F:976 , HOH F:994
BINDING SITE FOR RESIDUE HEM F 813
16
IC9
SOFTWARE
HEM A:813 , THR F:478 , HIS F:479 , SER F:486 , CYS F:487 , CYS F:562 , CYS F:578 , HIS F:579 , LEU F:586 , LEU F:590 , GLU F:601 , VAL F:602 , TRP F:605 , HOH F:909
BINDING SITE FOR RESIDUE HEM F 814
17
KC6
SOFTWARE
CYS I:399 , CYS I:495 , SO2 I:802 , HEM I:807
BINDING SITE FOR RESIDUE CU1 I 801
18
KC7
SOFTWARE
LYS I:208 , TYR I:285 , ARG I:366 , LYS I:393 , CYS I:399 , CU1 I:801 , HEM I:807 , HOH I:1118
BINDING SITE FOR RESIDUE SO2 I 802
19
KC8
SOFTWARE
ILE I:357
BINDING SITE FOR RESIDUE BU3 I 803
20
KC9
SOFTWARE
LYS I:288 , SER I:394 , ARG I:539 , ASP I:540
BINDING SITE FOR RESIDUE BU3 I 804
21
LC1
SOFTWARE
ASN I:359 , GLN I:365 , GLY I:403 , TYR I:412 , HOH I:1117
BINDING SITE FOR RESIDUE ACT I 805
22
LC2
SOFTWARE
CYS I:143 , CYS I:146 , HIS I:147 , GLU I:340 , HIS I:343 , GLY I:346 , GLY I:347 , HIS I:348 , LEU I:349 , HEM I:808 , HOH I:911 , ARG J:124 , VAL J:125 , ALA J:126 , ILE J:357 , SER J:358 , ASN J:359 , CYS J:360 , GLU J:361 , ARG J:362 , HOH J:925
BINDING SITE FOR RESIDUE HEM I 806
23
LC3
SOFTWARE
TYR I:123 , VAL I:202 , GLY I:203 , HIS I:204 , ARG I:206 , THR I:207 , LYS I:208 , ARG I:218 , TYR I:301 , CYS I:302 , CYS I:305 , HIS I:306 , CYS I:363 , HIS I:364 , CYS I:399 , GLY I:400 , GLU I:402 , CYS I:495 , ARG I:513 , CU1 I:801 , SO2 I:802 , HEM I:809 , HEM I:810
BINDING SITE FOR RESIDUE HEM I 807
24
LC4
SOFTWARE
HIS I:147 , TYR I:151 , TRP I:154 , HIS I:159 , VAL I:337 , CYS I:339 , CYS I:342 , HIS I:343 , SER I:358 , ALA I:419 , PRO I:424 , HIS I:425 , LYS I:459 , HEM I:806 , HEM I:809 , HOH I:912 , HOH I:930 , ASN J:359 , GLU J:361 , ARG J:417 , HOH J:914 , HOH J:1060
BINDING SITE FOR RESIDUE HEM I 808
25
LC5
SOFTWARE
ARG I:158 , HIS I:159 , THR I:162 , HIS I:204 , VAL I:304 , CYS I:305 , HIS I:306 , VAL I:337 , CYS I:360 , ARG I:362 , CYS I:363 , HIS I:364 , VAL I:427 , THR I:428 , SER I:454 , ARG I:513 , HEM I:807 , HEM I:808 , HEM I:810
BINDING SITE FOR RESIDUE HEM I 809
26
LC6
SOFTWARE
ARG I:206 , HIS I:364 , GLU I:402 , GLY I:403 , HIS I:411 , MET I:416 , ARG I:417 , CYS I:418 , CYS I:421 , HIS I:422 , SER I:454 , LYS I:455 , PRO I:456 , LEU I:458 , PHE I:491 , ARG I:513 , ARG I:514 , HIS I:516 , TRP I:518 , HEM I:807 , HEM I:809 , HEM I:811 , HOH I:907 , HOH I:913 , HOH I:937
BINDING SITE FOR RESIDUE HEM I 810
27
LC7
SOFTWARE
HIS I:411 , MET I:416 , LYS I:460 , CYS I:462 , CYS I:465 , HIS I:466 , HIS I:488 , MET I:489 , TRP I:518 , ARG I:553 , HEM I:810 , HEM I:812 , HOH I:1032 , HOH I:1053 , HOH I:1064
BINDING SITE FOR RESIDUE HEM I 811
28
LC8
SOFTWARE
CYS I:462 , THR I:463 , HIS I:466 , GLN I:469 , GLN I:473 , HIS I:479 , CYS I:484 , CYS I:487 , HIS I:488 , ILE I:520 , GLN I:606 , ASP I:657 , GLY I:658 , TRP I:660 , HIS I:663 , HEM I:811 , HOH I:909 , HOH I:949 , HOH I:1048 , HOH I:1095
BINDING SITE FOR RESIDUE HEM I 812
29
LC9
SOFTWARE
THR I:478 , HIS I:479 , ASN I:482 , SER I:486 , LEU I:558 , ALA I:561 , CYS I:562 , ALA I:575 , CYS I:578 , HIS I:579 , GLU I:601 , VAL I:602 , TRP I:605
BINDING SITE FOR RESIDUE HEM I 813
30
MC1
SOFTWARE
CYS J:399 , CYS J:495 , SX J:802 , HEM J:807
BINDING SITE FOR RESIDUE CU1 J 801
31
MC2
SOFTWARE
ARG J:366 , LYS J:393 , CYS J:399 , CU1 J:801 , HEM J:807 , HOH J:1012 , HOH J:1057
BINDING SITE FOR RESIDUE SX J 802
32
MC3
SOFTWARE
ILE J:357 , SER J:358 , ASN J:359 , HOH J:914
BINDING SITE FOR RESIDUE BU3 J 803
33
MC4
SOFTWARE
SER J:394 , ASP J:540 , GLY J:541
BINDING SITE FOR RESIDUE BU3 J 804
34
MC5
SOFTWARE
ASN J:359 , GLN J:365 , GLY J:403 , THR J:406 , TYR J:412 , HOH J:977
BINDING SITE FOR RESIDUE ACT J 805
35
MC6
SOFTWARE
ARG F:124 , VAL F:125 , ILE F:357 , SER F:358 , ASN F:359 , CYS F:360 , GLU F:361 , ARG F:362 , BU3 F:803 , HOH F:932 , HOH F:1093 , ILE J:138 , CYS J:143 , CYS J:146 , HIS J:147 , HIS J:343 , GLY J:346 , HIS J:348 , LEU J:349 , HEM J:808 , HOH J:941
BINDING SITE FOR RESIDUE HEM J 806
36
MC7
SOFTWARE
TYR J:123 , VAL J:202 , HIS J:204 , ARG J:206 , THR J:207 , LYS J:208 , ARG J:218 , TYR J:301 , CYS J:302 , CYS J:305 , HIS J:306 , CYS J:363 , HIS J:364 , CYS J:399 , GLY J:400 , GLU J:402 , ARG J:513 , CU1 J:801 , SX J:802 , HEM J:809 , HEM J:810
BINDING SITE FOR RESIDUE HEM J 807
37
MC8
SOFTWARE
ASN F:359 , GLU F:361 , ARG F:417 , BU3 F:803 , HOH F:913 , HIS J:147 , TYR J:151 , TRP J:154 , HIS J:159 , VAL J:337 , SER J:338 , CYS J:339 , CYS J:342 , HIS J:343 , ILE J:357 , SER J:358 , ALA J:419 , PRO J:424 , HIS J:425 , LYS J:459 , HEM J:806 , HEM J:809 , HOH J:902 , HOH J:929 , HOH J:1001
BINDING SITE FOR RESIDUE HEM J 808
38
MC9
SOFTWARE
ARG J:158 , HIS J:159 , THR J:162 , HIS J:204 , VAL J:304 , CYS J:305 , HIS J:306 , VAL J:337 , CYS J:360 , ARG J:362 , CYS J:363 , HIS J:364 , VAL J:427 , THR J:428 , SER J:454 , ARG J:513 , HEM J:807 , HEM J:808 , HEM J:810
BINDING SITE FOR RESIDUE HEM J 809
39
NC1
SOFTWARE
ARG J:206 , HIS J:364 , GLU J:402 , GLY J:403 , MET J:416 , CYS J:418 , CYS J:421 , HIS J:422 , SER J:454 , LYS J:455 , LEU J:458 , PHE J:491 , ARG J:513 , ARG J:514 , HIS J:516 , TRP J:518 , HEM J:807 , HEM J:809 , HEM J:811 , HOH J:908 , HOH J:985 , HOH J:991 , HOH J:1049
BINDING SITE FOR RESIDUE HEM J 810
40
NC2
SOFTWARE
ASP I:464 , HIS J:411 , LYS J:414 , MET J:416 , LYS J:460 , CYS J:462 , CYS J:465 , HIS J:466 , HIS J:488 , TRP J:518 , ARG J:553 , HEM J:810 , HEM J:812 , HOH J:919 , HOH J:957 , HOH J:984 , HOH J:995
BINDING SITE FOR RESIDUE HEM J 811
41
NC3
SOFTWARE
CYS J:462 , THR J:463 , HIS J:466 , HIS J:479 , CYS J:484 , CYS J:487 , HIS J:488 , ILE J:520 , GLN J:606 , ASP J:657 , GLY J:658 , TRP J:660 , HIS J:663 , HEM J:811 , HOH J:912 , HOH J:920 , HOH J:932 , HOH J:949
BINDING SITE FOR RESIDUE HEM J 812
42
NC4
SOFTWARE
THR J:478 , HIS J:479 , ASN J:482 , LEU J:558 , ALA J:561 , CYS J:562 , ALA J:575 , CYS J:578 , HIS J:579 , LEU J:586 , GLU J:601 , VAL J:602 , TRP J:605
BINDING SITE FOR RESIDUE HEM J 813
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain F
Chain I
Chain J
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (376 KB)
Header - Biol.Unit 1
Biol.Unit 2 (373 KB)
Header - Biol.Unit 2
Biol.Unit 3 (371 KB)
Header - Biol.Unit 3
Biol.Unit 4 (369 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4RKM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help