PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4RKM
Biol. Unit 2
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (376 KB)
Biol.Unit 2 (373 KB)
Biol.Unit 3 (371 KB)
Biol.Unit 4 (369 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
WOLINELLA SUCCINOGENES OCTAHEME SULFITE REDUCTASE MCCA, FORM I
Authors
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
Date
:
13 Oct 14 (Deposition) - 04 Feb 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,K (1x)
Biol. Unit 3: F,I,J (1x)
Biol. Unit 4: G,H,L (1x)
Keywords
:
Multiheme Cytochrome C, Sulfite Reductase, Periplasmic, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
The Octahaem Mcca Is A Haem C-Copper Sulfite Reductase.
Nature V. 520 706 2015
[
close entry info
]
Hetero Components
(5, 37)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
2a: (R,R)-2,3-BUTANEDIOL (BU3a)
2aa: (R,R)-2,3-BUTANEDIOL (BU3aa)
2b: (R,R)-2,3-BUTANEDIOL (BU3b)
2c: (R,R)-2,3-BUTANEDIOL (BU3c)
2d: (R,R)-2,3-BUTANEDIOL (BU3d)
2e: (R,R)-2,3-BUTANEDIOL (BU3e)
2f: (R,R)-2,3-BUTANEDIOL (BU3f)
2g: (R,R)-2,3-BUTANEDIOL (BU3g)
2h: (R,R)-2,3-BUTANEDIOL (BU3h)
2i: (R,R)-2,3-BUTANEDIOL (BU3i)
2j: (R,R)-2,3-BUTANEDIOL (BU3j)
2k: (R,R)-2,3-BUTANEDIOL (BU3k)
2l: (R,R)-2,3-BUTANEDIOL (BU3l)
2m: (R,R)-2,3-BUTANEDIOL (BU3m)
2n: (R,R)-2,3-BUTANEDIOL (BU3n)
2o: (R,R)-2,3-BUTANEDIOL (BU3o)
2p: (R,R)-2,3-BUTANEDIOL (BU3p)
2q: (R,R)-2,3-BUTANEDIOL (BU3q)
2r: (R,R)-2,3-BUTANEDIOL (BU3r)
2s: (R,R)-2,3-BUTANEDIOL (BU3s)
2t: (R,R)-2,3-BUTANEDIOL (BU3t)
2u: (R,R)-2,3-BUTANEDIOL (BU3u)
2v: (R,R)-2,3-BUTANEDIOL (BU3v)
2w: (R,R)-2,3-BUTANEDIOL (BU3w)
2x: (R,R)-2,3-BUTANEDIOL (BU3x)
2y: (R,R)-2,3-BUTANEDIOL (BU3y)
2z: (R,R)-2,3-BUTANEDIOL (BU3z)
3a: COPPER (I) ION (CU1a)
3b: COPPER (I) ION (CU1b)
3c: COPPER (I) ION (CU1c)
3d: COPPER (I) ION (CU1d)
3e: COPPER (I) ION (CU1e)
3f: COPPER (I) ION (CU1f)
3g: COPPER (I) ION (CU1g)
3h: COPPER (I) ION (CU1h)
3i: COPPER (I) ION (CU1i)
3j: COPPER (I) ION (CU1j)
3k: COPPER (I) ION (CU1k)
3l: COPPER (I) ION (CU1l)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
4ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
4ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
4ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
4ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
4af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
4ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
4ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
4ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
4aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
4ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
4al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
4am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
4an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
4ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
4ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
4aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
4ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
4as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
4at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
4au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
4av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
4aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
4ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
4ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
4az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
4bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
4bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
4bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
4be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
4bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
4bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
4bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
4bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
4bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
4bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
4bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
4bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
4bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
4bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
4bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
4bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
4br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
4bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
4bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
4bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
4bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
4bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
4bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
4by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
4bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
4cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
4cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
4cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
4ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
4cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
4cg: PROTOPORPHYRIN IX CONTAINING FE (HEMcg)
4ch: PROTOPORPHYRIN IX CONTAINING FE (HEMch)
4ci: PROTOPORPHYRIN IX CONTAINING FE (HEMci)
4cj: PROTOPORPHYRIN IX CONTAINING FE (HEMcj)
4ck: PROTOPORPHYRIN IX CONTAINING FE (HEMck)
4cl: PROTOPORPHYRIN IX CONTAINING FE (HEMcl)
4cm: PROTOPORPHYRIN IX CONTAINING FE (HEMcm)
4cn: PROTOPORPHYRIN IX CONTAINING FE (HEMcn)
4co: PROTOPORPHYRIN IX CONTAINING FE (HEMco)
4cp: PROTOPORPHYRIN IX CONTAINING FE (HEMcp)
4cq: PROTOPORPHYRIN IX CONTAINING FE (HEMcq)
4cr: PROTOPORPHYRIN IX CONTAINING FE (HEMcr)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
4j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
4k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
4l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
4m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
4n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
4o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
4p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
4q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
4r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
4s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
4t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
4u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
4v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
4w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
4x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
4y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
4z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
5a: SULFUR DIOXIDE (SO2a)
5b: SULFUR DIOXIDE (SO2b)
5c: SULFUR DIOXIDE (SO2c)
5d: SULFUR DIOXIDE (SO2d)
6a: SULFUR OXIDE (SXa)
6b: SULFUR OXIDE (SXb)
6c: SULFUR OXIDE (SXc)
6d: SULFUR OXIDE (SXd)
6e: SULFUR OXIDE (SXe)
6f: SULFUR OXIDE (SXf)
6g: SULFUR OXIDE (SXg)
6h: SULFUR OXIDE (SXh)
6i: SULFUR OXIDE (SXi)
6j: SULFUR OXIDE (SXj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
BU3
6
Ligand/Ion
(R,R)-2,3-BUTANEDIOL
3
CU1
3
Ligand/Ion
COPPER (I) ION
4
HEM
24
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
SO2
1
Ligand/Ion
SULFUR DIOXIDE
6
SX
-1
Ligand/Ion
SULFUR OXIDE
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: EC6 (SOFTWARE)
02: EC7 (SOFTWARE)
03: EC8 (SOFTWARE)
04: EC9 (SOFTWARE)
05: FC1 (SOFTWARE)
06: FC2 (SOFTWARE)
07: FC3 (SOFTWARE)
08: FC4 (SOFTWARE)
09: FC5 (SOFTWARE)
10: FC6 (SOFTWARE)
11: FC7 (SOFTWARE)
12: FC8 (SOFTWARE)
13: FC9 (SOFTWARE)
14: GC1 (SOFTWARE)
15: GC2 (SOFTWARE)
16: GC3 (SOFTWARE)
17: GC4 (SOFTWARE)
18: GC5 (SOFTWARE)
19: GC6 (SOFTWARE)
20: GC7 (SOFTWARE)
21: GC8 (SOFTWARE)
22: GC9 (SOFTWARE)
23: HC1 (SOFTWARE)
24: HC2 (SOFTWARE)
25: HC3 (SOFTWARE)
26: HC4 (SOFTWARE)
27: KC5 (SOFTWARE)
28: NC5 (SOFTWARE)
29: NC6 (SOFTWARE)
30: NC7 (SOFTWARE)
31: NC8 (SOFTWARE)
32: NC9 (SOFTWARE)
33: OC1 (SOFTWARE)
34: OC2 (SOFTWARE)
35: OC3 (SOFTWARE)
36: OC4 (SOFTWARE)
37: OC5 (SOFTWARE)
38: OC6 (SOFTWARE)
39: OC7 (SOFTWARE)
40: OC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC6
SOFTWARE
CYS D:399 , CYS D:495 , SO2 D:802 , HEM D:807
BINDING SITE FOR RESIDUE CU1 D 801
02
EC7
SOFTWARE
LYS D:208 , TYR D:285 , ARG D:366 , LYS D:393 , CYS D:399 , CU1 D:801 , HEM D:807 , HOH D:1186
BINDING SITE FOR RESIDUE SO2 D 802
03
EC8
SOFTWARE
ILE D:357 , ASN D:359 , HEM E:806 , HEM E:808 , HOH E:952
BINDING SITE FOR RESIDUE BU3 D 803
04
EC9
SOFTWARE
LYS D:288 , SER D:394 , ASP D:540 , HOH D:1077
BINDING SITE FOR RESIDUE BU3 D 804
05
FC1
SOFTWARE
ASN D:359 , GLN D:365 , GLY D:403 , THR D:406 , TYR D:412 , HOH D:949
BINDING SITE FOR RESIDUE ACT D 805
06
FC2
SOFTWARE
CYS D:143 , CYS D:146 , HIS D:147 , GLU D:340 , HIS D:343 , GLY D:346 , GLY D:347 , HIS D:348 , LEU D:349 , HEM D:808 , HOH D:971 , HOH D:1076 , ARG K:124 , VAL K:125 , ALA K:126 , ILE K:357 , SER K:358 , ASN K:359 , CYS K:360 , GLU K:361 , ARG K:362 , BU3 K:803 , HOH K:980
BINDING SITE FOR RESIDUE HEM D 806
07
FC3
SOFTWARE
TYR D:123 , VAL D:202 , GLY D:203 , HIS D:204 , ARG D:206 , THR D:207 , LYS D:208 , ARG D:218 , TYR D:301 , CYS D:302 , CYS D:305 , HIS D:306 , CYS D:363 , HIS D:364 , CYS D:399 , GLY D:400 , GLU D:402 , CYS D:495 , ARG D:513 , CU1 D:801 , SO2 D:802 , HEM D:809 , HEM D:810
BINDING SITE FOR RESIDUE HEM D 807
08
FC4
SOFTWARE
HIS D:147 , GLN D:150 , TYR D:151 , TRP D:154 , HIS D:159 , VAL D:337 , SER D:338 , CYS D:339 , CYS D:342 , HIS D:343 , ILE D:357 , SER D:358 , ALA D:419 , PRO D:424 , HIS D:425 , LYS D:459 , HEM D:806 , HEM D:809 , HOH D:913 , HOH D:952 , HOH D:980 , ASN K:359 , GLU K:361 , ARG K:417 , HOH K:959
BINDING SITE FOR RESIDUE HEM D 808
09
FC5
SOFTWARE
ARG D:158 , HIS D:159 , THR D:162 , HIS D:204 , VAL D:304 , CYS D:305 , HIS D:306 , VAL D:337 , CYS D:360 , CYS D:363 , HIS D:364 , VAL D:427 , THR D:428 , SER D:454 , ARG D:513 , HEM D:807 , HEM D:808 , HEM D:810
BINDING SITE FOR RESIDUE HEM D 809
10
FC6
SOFTWARE
ARG D:206 , HIS D:364 , GLU D:402 , GLY D:403 , MET D:416 , ARG D:417 , CYS D:418 , CYS D:421 , HIS D:422 , SER D:454 , LYS D:455 , PRO D:456 , LEU D:458 , PHE D:491 , ARG D:513 , ARG D:514 , HIS D:516 , HEM D:807 , HEM D:809 , HOH D:953 , HOH D:976 , HOH D:1039 , HOH D:1151
BINDING SITE FOR RESIDUE HEM D 810
11
FC7
SOFTWARE
HIS D:411 , MET D:416 , LYS D:460 , CYS D:462 , CYS D:465 , HIS D:466 , HIS D:488 , TRP D:518 , ARG D:553 , HEM D:812 , HOH D:954 , HOH D:1004 , HOH D:1059 , HOH D:1116 , HOH D:1117 , ASP E:464
BINDING SITE FOR RESIDUE HEM D 811
12
FC8
SOFTWARE
CYS D:462 , HIS D:466 , GLN D:473 , HIS D:479 , CYS D:484 , CYS D:487 , HIS D:488 , ILE D:520 , GLN D:606 , ASP D:657 , GLY D:658 , HIS D:663 , HEM D:811 , HOH D:906 , HOH D:915 , HOH D:931 , HOH D:1057 , HOH D:1184
BINDING SITE FOR RESIDUE HEM D 812
13
FC9
SOFTWARE
THR D:478 , HIS D:479 , SER D:486 , CYS D:562 , ALA D:575 , CYS D:578 , HIS D:579 , LEU D:586 , LEU D:590 , VAL D:602 , TRP D:605 , HEM H:814
BINDING SITE FOR RESIDUE HEM D 813
14
GC1
SOFTWARE
CYS E:399 , CYS E:495 , SX E:802 , HEM E:807
BINDING SITE FOR RESIDUE CU1 E 801
15
GC2
SOFTWARE
ARG E:366 , LYS E:393 , CYS E:399 , CU1 E:801 , HEM E:807
BINDING SITE FOR RESIDUE SX E 802
16
GC3
SOFTWARE
ILE E:357 , ASN E:359 , HOH E:1058 , ILE K:357
BINDING SITE FOR RESIDUE BU3 E 803
17
GC4
SOFTWARE
LYS E:288 , SER E:394 , TYR E:499 , ASP E:540 , HOH E:1018 , HOH E:1110
BINDING SITE FOR RESIDUE BU3 E 804
18
GC5
SOFTWARE
GLN E:365 , GLY E:403 , THR E:406 , TYR E:412 , HOH E:1105
BINDING SITE FOR RESIDUE ACT E 805
19
GC6
SOFTWARE
ARG D:124 , VAL D:125 , ALA D:126 , ILE D:357 , SER D:358 , ASN D:359 , CYS D:360 , GLU D:361 , ARG D:362 , BU3 D:803 , HOH D:908 , HOH D:966 , CYS E:143 , CYS E:146 , HIS E:147 , GLU E:340 , HIS E:343 , GLY E:346 , GLY E:347 , HIS E:348 , LEU E:349 , HEM E:808 , HOH E:907
BINDING SITE FOR RESIDUE HEM E 806
20
GC7
SOFTWARE
TYR E:123 , ARG E:158 , VAL E:202 , GLY E:203 , HIS E:204 , ARG E:206 , THR E:207 , LYS E:208 , ARG E:218 , TYR E:301 , CYS E:302 , CYS E:305 , HIS E:306 , CYS E:363 , HIS E:364 , CYS E:399 , GLY E:400 , GLU E:402 , ARG E:513 , CU1 E:801 , SX E:802 , HEM E:809 , HEM E:810
BINDING SITE FOR RESIDUE HEM E 807
21
GC8
SOFTWARE
ASN D:359 , GLU D:361 , ARG D:417 , BU3 D:803 , HOH D:967 , CYS E:143 , HIS E:147 , TYR E:151 , TRP E:154 , HIS E:159 , VAL E:337 , CYS E:339 , CYS E:342 , HIS E:343 , ILE E:357 , SER E:358 , ALA E:419 , PRO E:424 , HIS E:425 , LYS E:459 , HEM E:806 , HEM E:809 , HOH E:924 , HOH E:952 , HOH E:966
BINDING SITE FOR RESIDUE HEM E 808
22
GC9
SOFTWARE
ARG E:158 , HIS E:159 , THR E:162 , HIS E:204 , VAL E:304 , CYS E:305 , HIS E:306 , VAL E:337 , SER E:358 , CYS E:360 , CYS E:363 , HIS E:364 , VAL E:427 , THR E:428 , SER E:454 , ARG E:513 , HEM E:807 , HEM E:808 , HEM E:810
BINDING SITE FOR RESIDUE HEM E 809
23
HC1
SOFTWARE
ARG E:206 , HIS E:364 , GLU E:402 , GLY E:403 , MET E:416 , ARG E:417 , CYS E:418 , CYS E:421 , HIS E:422 , SER E:454 , LYS E:455 , LEU E:458 , PHE E:491 , ARG E:513 , ARG E:514 , HIS E:516 , TRP E:518 , HEM E:807 , HEM E:809 , HEM E:811 , HOH E:929 , HOH E:976 , HOH E:1115
BINDING SITE FOR RESIDUE HEM E 810
24
HC2
SOFTWARE
HIS E:411 , MET E:416 , LYS E:460 , CYS E:462 , CYS E:465 , HIS E:466 , HIS E:488 , MET E:489 , TRP E:518 , ARG E:553 , HEM E:810 , HEM E:812 , HOH E:927 , HOH E:950
BINDING SITE FOR RESIDUE HEM E 811
25
HC3
SOFTWARE
CYS E:462 , HIS E:466 , GLN E:469 , HIS E:479 , CYS E:484 , CYS E:487 , HIS E:488 , ILE E:520 , VAL E:522 , GLN E:606 , ASP E:657 , GLY E:658 , HIS E:663 , HEM E:811 , HOH E:903 , HOH E:937 , HOH E:999 , HOH E:1004
BINDING SITE FOR RESIDUE HEM E 812
26
HC4
SOFTWARE
THR E:478 , HIS E:479 , ASN E:482 , SER E:486 , ALA E:561 , CYS E:562 , ALA E:575 , CYS E:578 , HIS E:579 , VAL E:602 , TRP E:605
BINDING SITE FOR RESIDUE HEM E 813
27
KC5
SOFTWARE
HEM D:813 , THR H:478 , HIS H:479 , SER H:486 , CYS H:562 , ALA H:575 , CYS H:578 , HIS H:579 , LEU H:586 , LEU H:590 , PHE H:592 , VAL H:602 , TRP H:605 , HOH H:1079
BINDING SITE FOR RESIDUE HEM H 814
28
NC5
SOFTWARE
CYS K:399 , CYS K:495 , SX K:802 , HEM K:807
BINDING SITE FOR RESIDUE CU1 K 801
29
NC6
SOFTWARE
ARG K:366 , LYS K:393 , CYS K:399 , CU1 K:801 , HEM K:807 , HOH K:1043
BINDING SITE FOR RESIDUE SX K 802
30
NC7
SOFTWARE
HEM D:806 , ILE K:357 , ASN K:359
BINDING SITE FOR RESIDUE BU3 K 803
31
NC8
SOFTWARE
LYS K:288 , SER K:394 , ASP K:540
BINDING SITE FOR RESIDUE BU3 K 804
32
NC9
SOFTWARE
ASN K:359 , GLN K:365 , GLY K:403 , THR K:406 , TYR K:412 , HOH K:1057
BINDING SITE FOR RESIDUE ACT K 805
33
OC1
SOFTWARE
TYR E:59 , ARG E:124 , VAL E:125 , ILE E:357 , SER E:358 , ASN E:359 , CYS E:360 , GLU E:361 , ARG E:362 , HOH E:910 , HOH E:1065 , CYS K:143 , CYS K:146 , HIS K:147 , HIS K:343 , GLY K:346 , GLY K:347 , HIS K:348 , LEU K:349 , HEM K:808 , HOH K:909
BINDING SITE FOR RESIDUE HEM K 806
34
OC2
SOFTWARE
TYR K:123 , ARG K:158 , VAL K:202 , GLY K:203 , HIS K:204 , ARG K:206 , THR K:207 , LYS K:208 , ARG K:218 , TYR K:301 , CYS K:302 , CYS K:305 , HIS K:306 , CYS K:363 , HIS K:364 , CYS K:399 , GLY K:400 , GLU K:402 , ARG K:513 , CU1 K:801 , SX K:802 , HEM K:809 , HEM K:810
BINDING SITE FOR RESIDUE HEM K 807
35
OC3
SOFTWARE
ASN E:359 , GLU E:361 , ARG E:417 , HOH E:934 , HIS K:147 , TYR K:151 , TRP K:154 , HIS K:159 , VAL K:337 , SER K:338 , CYS K:339 , CYS K:342 , HIS K:343 , SER K:358 , ALA K:419 , PRO K:424 , HIS K:425 , LYS K:459 , HEM K:806 , HEM K:809 , HOH K:903 , HOH K:904 , HOH K:916 , HOH K:1049
BINDING SITE FOR RESIDUE HEM K 808
36
OC4
SOFTWARE
ARG K:158 , HIS K:159 , THR K:162 , HIS K:204 , VAL K:304 , CYS K:305 , HIS K:306 , VAL K:337 , CYS K:342 , CYS K:360 , ARG K:362 , CYS K:363 , HIS K:364 , VAL K:427 , THR K:428 , SER K:454 , ARG K:513 , HEM K:807 , HEM K:808 , HEM K:810
BINDING SITE FOR RESIDUE HEM K 809
37
OC5
SOFTWARE
ARG K:206 , HIS K:364 , GLU K:402 , GLY K:403 , HIS K:411 , MET K:416 , ARG K:417 , CYS K:418 , CYS K:421 , HIS K:422 , SER K:454 , LYS K:455 , LEU K:458 , PHE K:491 , ARG K:513 , ARG K:514 , HIS K:516 , TRP K:518 , HEM K:807 , HEM K:809 , HEM K:811 , HOH K:919 , HOH K:932 , HOH K:951
BINDING SITE FOR RESIDUE HEM K 810
38
OC6
SOFTWARE
HIS K:411 , LYS K:414 , MET K:416 , CYS K:462 , CYS K:465 , HIS K:466 , HIS K:488 , TRP K:518 , ARG K:553 , HEM K:810 , HEM K:812 , HOH K:923 , HOH K:924
BINDING SITE FOR RESIDUE HEM K 811
39
OC7
SOFTWARE
CYS K:462 , THR K:463 , HIS K:466 , GLN K:469 , GLN K:473 , HIS K:479 , CYS K:484 , CYS K:487 , HIS K:488 , ILE K:520 , GLN K:606 , ASP K:657 , GLY K:658 , TRP K:660 , HIS K:663 , HEM K:811 , HOH K:902 , HOH K:944 , HOH K:953 , HOH K:961 , HOH K:983 , HOH K:988
BINDING SITE FOR RESIDUE HEM K 812
40
OC8
SOFTWARE
THR K:478 , HIS K:479 , ASN K:482 , ALA K:561 , CYS K:562 , ALA K:575 , CYS K:578 , HIS K:579 , PHE K:592 , GLU K:601 , VAL K:602 , TRP K:605
BINDING SITE FOR RESIDUE HEM K 813
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain K
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (376 KB)
Header - Biol.Unit 1
Biol.Unit 2 (373 KB)
Header - Biol.Unit 2
Biol.Unit 3 (371 KB)
Header - Biol.Unit 3
Biol.Unit 4 (369 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4RKM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help