PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4RKM
Biol. Unit 1
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (376 KB)
Biol.Unit 2 (373 KB)
Biol.Unit 3 (371 KB)
Biol.Unit 4 (369 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
WOLINELLA SUCCINOGENES OCTAHEME SULFITE REDUCTASE MCCA, FORM I
Authors
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
Date
:
13 Oct 14 (Deposition) - 04 Feb 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,K (1x)
Biol. Unit 3: F,I,J (1x)
Biol. Unit 4: G,H,L (1x)
Keywords
:
Multiheme Cytochrome C, Sulfite Reductase, Periplasmic, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hermann, M. Kern, L. La Pietra, J. Simon, O. Einsle
The Octahaem Mcca Is A Haem C-Copper Sulfite Reductase.
Nature V. 520 706 2015
[
close entry info
]
Hetero Components
(5, 38)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
2a: (R,R)-2,3-BUTANEDIOL (BU3a)
2aa: (R,R)-2,3-BUTANEDIOL (BU3aa)
2b: (R,R)-2,3-BUTANEDIOL (BU3b)
2c: (R,R)-2,3-BUTANEDIOL (BU3c)
2d: (R,R)-2,3-BUTANEDIOL (BU3d)
2e: (R,R)-2,3-BUTANEDIOL (BU3e)
2f: (R,R)-2,3-BUTANEDIOL (BU3f)
2g: (R,R)-2,3-BUTANEDIOL (BU3g)
2h: (R,R)-2,3-BUTANEDIOL (BU3h)
2i: (R,R)-2,3-BUTANEDIOL (BU3i)
2j: (R,R)-2,3-BUTANEDIOL (BU3j)
2k: (R,R)-2,3-BUTANEDIOL (BU3k)
2l: (R,R)-2,3-BUTANEDIOL (BU3l)
2m: (R,R)-2,3-BUTANEDIOL (BU3m)
2n: (R,R)-2,3-BUTANEDIOL (BU3n)
2o: (R,R)-2,3-BUTANEDIOL (BU3o)
2p: (R,R)-2,3-BUTANEDIOL (BU3p)
2q: (R,R)-2,3-BUTANEDIOL (BU3q)
2r: (R,R)-2,3-BUTANEDIOL (BU3r)
2s: (R,R)-2,3-BUTANEDIOL (BU3s)
2t: (R,R)-2,3-BUTANEDIOL (BU3t)
2u: (R,R)-2,3-BUTANEDIOL (BU3u)
2v: (R,R)-2,3-BUTANEDIOL (BU3v)
2w: (R,R)-2,3-BUTANEDIOL (BU3w)
2x: (R,R)-2,3-BUTANEDIOL (BU3x)
2y: (R,R)-2,3-BUTANEDIOL (BU3y)
2z: (R,R)-2,3-BUTANEDIOL (BU3z)
3a: COPPER (I) ION (CU1a)
3b: COPPER (I) ION (CU1b)
3c: COPPER (I) ION (CU1c)
3d: COPPER (I) ION (CU1d)
3e: COPPER (I) ION (CU1e)
3f: COPPER (I) ION (CU1f)
3g: COPPER (I) ION (CU1g)
3h: COPPER (I) ION (CU1h)
3i: COPPER (I) ION (CU1i)
3j: COPPER (I) ION (CU1j)
3k: COPPER (I) ION (CU1k)
3l: COPPER (I) ION (CU1l)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
4ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
4ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
4ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
4ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
4af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
4ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
4ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
4ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
4aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
4ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
4al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
4am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
4an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
4ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
4ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
4aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
4ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
4as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
4at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
4au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
4av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
4aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
4ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
4ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
4az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
4bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
4bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
4bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
4be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
4bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
4bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
4bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
4bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
4bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
4bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
4bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
4bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
4bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
4bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
4bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
4bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
4br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
4bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
4bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
4bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
4bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
4bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
4bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
4by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
4bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
4cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
4cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
4cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
4ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
4cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
4cg: PROTOPORPHYRIN IX CONTAINING FE (HEMcg)
4ch: PROTOPORPHYRIN IX CONTAINING FE (HEMch)
4ci: PROTOPORPHYRIN IX CONTAINING FE (HEMci)
4cj: PROTOPORPHYRIN IX CONTAINING FE (HEMcj)
4ck: PROTOPORPHYRIN IX CONTAINING FE (HEMck)
4cl: PROTOPORPHYRIN IX CONTAINING FE (HEMcl)
4cm: PROTOPORPHYRIN IX CONTAINING FE (HEMcm)
4cn: PROTOPORPHYRIN IX CONTAINING FE (HEMcn)
4co: PROTOPORPHYRIN IX CONTAINING FE (HEMco)
4cp: PROTOPORPHYRIN IX CONTAINING FE (HEMcp)
4cq: PROTOPORPHYRIN IX CONTAINING FE (HEMcq)
4cr: PROTOPORPHYRIN IX CONTAINING FE (HEMcr)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
4j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
4k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
4l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
4m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
4n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
4o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
4p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
4q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
4r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
4s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
4t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
4u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
4v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
4w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
4x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
4y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
4z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
5a: SULFUR DIOXIDE (SO2a)
5b: SULFUR DIOXIDE (SO2b)
5c: SULFUR DIOXIDE (SO2c)
5d: SULFUR DIOXIDE (SO2d)
6a: SULFUR OXIDE (SXa)
6b: SULFUR OXIDE (SXb)
6c: SULFUR OXIDE (SXc)
6d: SULFUR OXIDE (SXd)
6e: SULFUR OXIDE (SXe)
6f: SULFUR OXIDE (SXf)
6g: SULFUR OXIDE (SXg)
6h: SULFUR OXIDE (SXh)
6i: SULFUR OXIDE (SXi)
6j: SULFUR OXIDE (SXj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
BU3
7
Ligand/Ion
(R,R)-2,3-BUTANEDIOL
3
CU1
3
Ligand/Ion
COPPER (I) ION
4
HEM
24
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
SO2
1
Ligand/Ion
SULFUR DIOXIDE
6
SX
-1
Ligand/Ion
SULFUR OXIDE
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: IC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:399 , CYS A:495 , SX A:802 , HEM A:807 , SO2 A:814
BINDING SITE FOR RESIDUE CU1 A 801
02
AC2
SOFTWARE
TYR A:301 , ARG A:366 , LYS A:393 , CYS A:399 , CU1 A:801 , HEM A:807 , SO2 A:814 , HOH A:1233
BINDING SITE FOR RESIDUE SX A 802
03
AC3
SOFTWARE
ILE A:357
BINDING SITE FOR RESIDUE BU3 A 803
04
AC4
SOFTWARE
LYS A:288 , SER A:394 , ARG A:539 , ASP A:540 , HOH A:1284
BINDING SITE FOR RESIDUE BU3 A 804
05
AC5
SOFTWARE
ASN A:359 , GLN A:365 , GLY A:403 , THR A:406 , TYR A:412 , HOH A:1249
BINDING SITE FOR RESIDUE ACT A 805
06
AC6
SOFTWARE
CYS A:143 , CYS A:146 , HIS A:147 , GLU A:340 , HIS A:343 , GLY A:346 , GLY A:347 , HIS A:348 , HEM A:808 , HOH A:990 , ARG B:124 , VAL B:125 , LEU B:356 , ILE B:357 , SER B:358 , ASN B:359 , CYS B:360 , GLU B:361 , ARG B:362 , HOH B:914 , HOH B:1030
BINDING SITE FOR RESIDUE HEM A 806
07
AC7
SOFTWARE
TYR A:123 , VAL A:202 , GLY A:203 , HIS A:204 , ARG A:206 , THR A:207 , LYS A:208 , PHE A:212 , ARG A:218 , TYR A:301 , CYS A:302 , CYS A:305 , HIS A:306 , CYS A:363 , HIS A:364 , CYS A:399 , GLY A:400 , GLU A:402 , ARG A:513 , CU1 A:801 , SX A:802 , HEM A:809 , HEM A:810 , SO2 A:814
BINDING SITE FOR RESIDUE HEM A 807
08
AC8
SOFTWARE
HIS A:147 , GLN A:150 , TYR A:151 , TRP A:154 , HIS A:159 , VAL A:337 , SER A:338 , CYS A:339 , CYS A:342 , HIS A:343 , ILE A:357 , SER A:358 , ALA A:419 , PRO A:424 , HIS A:425 , LYS A:459 , HEM A:806 , HEM A:809 , HOH A:960 , HOH A:1000 , HOH A:1208 , HOH A:1234 , ASN B:359 , GLU B:361 , ARG B:417 , HOH B:958
BINDING SITE FOR RESIDUE HEM A 808
09
AC9
SOFTWARE
ARG A:158 , HIS A:159 , THR A:162 , HIS A:204 , VAL A:304 , CYS A:305 , HIS A:306 , VAL A:337 , CYS A:360 , ARG A:362 , CYS A:363 , HIS A:364 , VAL A:427 , THR A:428 , SER A:454 , ARG A:513 , HEM A:807 , HEM A:808 , HEM A:810
BINDING SITE FOR RESIDUE HEM A 809
10
BC1
SOFTWARE
ARG A:206 , HIS A:364 , GLU A:402 , GLY A:403 , MET A:416 , ARG A:417 , CYS A:418 , CYS A:421 , HIS A:422 , SER A:454 , LYS A:455 , PRO A:456 , LEU A:458 , PHE A:491 , ARG A:513 , ARG A:514 , HIS A:516 , TRP A:518 , HEM A:807 , HEM A:809 , HOH A:920 , HOH A:1087 , HOH A:1206 , HOH A:1316
BINDING SITE FOR RESIDUE HEM A 810
11
BC2
SOFTWARE
HIS A:411 , MET A:416 , LYS A:460 , CYS A:462 , CYS A:465 , HIS A:466 , HIS A:488 , TRP A:518 , ARG A:553 , HEM A:812 , HOH A:928 , HOH A:935 , HOH A:955 , HOH A:994 , HOH A:1181
BINDING SITE FOR RESIDUE HEM A 811
12
BC3
SOFTWARE
CYS A:462 , HIS A:466 , GLN A:469 , GLN A:473 , HIS A:479 , CYS A:484 , CYS A:487 , HIS A:488 , ILE A:520 , VAL A:522 , GLN A:606 , ASP A:657 , GLY A:658 , HIS A:663 , HEM A:811 , HOH A:974 , HOH A:977 , HOH A:1053 , HOH A:1139 , HOH A:1180 , HOH A:1189 , HOH A:1217
BINDING SITE FOR RESIDUE HEM A 812
13
BC4
SOFTWARE
THR A:478 , HIS A:479 , SER A:486 , ALA A:561 , CYS A:562 , ALA A:575 , CYS A:578 , HIS A:579 , LEU A:586 , VAL A:602 , TRP A:605 , HEM F:814
BINDING SITE FOR RESIDUE HEM A 813
14
BC5
SOFTWARE
LYS A:208 , TYR A:285 , ARG A:366 , LYS A:393 , CYS A:399 , CYS A:495 , CU1 A:801 , SX A:802 , HEM A:807 , HOH A:1232 , HOH A:1233
BINDING SITE FOR RESIDUE SO2 A 814
15
BC6
SOFTWARE
CYS B:399 , CYS B:495 , SX B:802 , HEM B:808
BINDING SITE FOR RESIDUE CU1 B 801
16
BC7
SOFTWARE
ARG B:366 , LYS B:393 , CYS B:399 , CU1 B:801 , HEM B:808 , HOH B:1148 , HOH B:1182
BINDING SITE FOR RESIDUE SX B 802
17
BC8
SOFTWARE
HOH A:1000 , ILE B:357
BINDING SITE FOR RESIDUE BU3 B 803
18
BC9
SOFTWARE
LYS B:288 , SER B:394 , ASP B:540
BINDING SITE FOR RESIDUE BU3 B 804
19
CC1
SOFTWARE
GLN B:615 , GLY B:619 , GLN B:683 , GLN I:615 , VAL I:618 , GLN I:683
BINDING SITE FOR RESIDUE BU3 B 805
20
CC2
SOFTWARE
ASN B:359 , GLN B:365 , GLY B:403 , THR B:406 , TYR B:412 , HOH B:1158
BINDING SITE FOR RESIDUE ACT B 806
21
CC3
SOFTWARE
CYS B:143 , CYS B:146 , HIS B:147 , GLU B:340 , HIS B:343 , GLY B:347 , HIS B:348 , HEM B:809 , HOH B:923 , HOH B:973 , ARG C:124 , VAL C:125 , ILE C:357 , SER C:358 , ASN C:359 , CYS C:360 , GLU C:361 , ARG C:362 , HOH C:1123
BINDING SITE FOR RESIDUE HEM B 807
22
CC4
SOFTWARE
TYR B:123 , VAL B:202 , GLY B:203 , HIS B:204 , ARG B:206 , THR B:207 , LYS B:208 , ARG B:218 , TYR B:301 , CYS B:302 , CYS B:305 , HIS B:306 , CYS B:363 , HIS B:364 , CYS B:399 , GLY B:400 , GLU B:402 , CYS B:495 , ARG B:513 , CU1 B:801 , SX B:802 , HEM B:810 , HEM B:811
BINDING SITE FOR RESIDUE HEM B 808
23
CC5
SOFTWARE
CYS B:143 , HIS B:147 , TYR B:151 , TRP B:154 , HIS B:159 , VAL B:337 , CYS B:339 , CYS B:342 , HIS B:343 , SER B:358 , ALA B:419 , PRO B:424 , HIS B:425 , LYS B:459 , HEM B:807 , HEM B:810 , HOH B:908 , HOH B:976 , HOH B:992 , HOH B:1193 , ASN C:359 , GLU C:361 , ARG C:417
BINDING SITE FOR RESIDUE HEM B 809
24
CC6
SOFTWARE
ARG B:158 , HIS B:159 , THR B:162 , HIS B:204 , VAL B:304 , CYS B:305 , HIS B:306 , VAL B:337 , SER B:358 , CYS B:360 , ARG B:362 , CYS B:363 , HIS B:364 , VAL B:427 , THR B:428 , SER B:454 , ARG B:513 , HEM B:808 , HEM B:809 , HEM B:811
BINDING SITE FOR RESIDUE HEM B 810
25
CC7
SOFTWARE
ARG B:206 , HIS B:364 , GLU B:402 , GLY B:403 , MET B:416 , CYS B:418 , CYS B:421 , HIS B:422 , SER B:454 , LYS B:455 , LEU B:458 , PHE B:491 , ARG B:513 , ARG B:514 , HIS B:516 , HEM B:808 , HEM B:810 , HEM B:812 , HOH B:948 , HOH B:959 , HOH B:1087 , HOH B:1128
BINDING SITE FOR RESIDUE HEM B 811
26
CC8
SOFTWARE
HIS B:411 , MET B:416 , LYS B:460 , CYS B:462 , CYS B:465 , HIS B:466 , HIS B:488 , MET B:489 , TRP B:518 , ARG B:553 , HEM B:811 , HEM B:813 , HOH B:921 , HOH B:1035 , HOH B:1142
BINDING SITE FOR RESIDUE HEM B 812
27
CC9
SOFTWARE
CYS B:462 , HIS B:466 , GLN B:469 , HIS B:479 , CYS B:484 , CYS B:487 , HIS B:488 , VAL B:522 , GLN B:606 , ASP B:657 , HIS B:663 , HEM B:812 , HOH B:917 , HOH B:987 , HOH B:990 , HOH B:1002 , HOH B:1080 , HOH B:1091
BINDING SITE FOR RESIDUE HEM B 813
28
DC1
SOFTWARE
THR B:478 , HIS B:479 , ASN B:482 , SER B:486 , ALA B:561 , CYS B:562 , ALA B:575 , CYS B:578 , HIS B:579 , GLU B:601 , VAL B:602 , HOH B:1027
BINDING SITE FOR RESIDUE HEM B 814
29
DC2
SOFTWARE
CYS C:399 , CYS C:495 , SX C:802 , HEM C:807
BINDING SITE FOR RESIDUE CU1 C 801
30
DC3
SOFTWARE
ARG C:366 , LYS C:393 , CYS C:399 , CU1 C:801 , HEM C:807 , HOH C:1127 , HOH C:1128
BINDING SITE FOR RESIDUE SX C 802
31
DC4
SOFTWARE
HOH B:976 , ILE C:357
BINDING SITE FOR RESIDUE BU3 C 803
32
DC5
SOFTWARE
LYS C:288 , SER C:394 , TYR C:499 , ASP C:540 , HOH C:924
BINDING SITE FOR RESIDUE BU3 C 804
33
DC6
SOFTWARE
GLN C:365 , GLY C:403 , THR C:406 , TYR C:412 , HOH C:1035
BINDING SITE FOR RESIDUE ACT C 805
34
DC7
SOFTWARE
ARG A:124 , VAL A:125 , ALA A:126 , ILE A:357 , SER A:358 , ASN A:359 , CYS A:360 , GLU A:361 , ARG A:362 , HOH A:958 , CYS C:143 , CYS C:146 , HIS C:147 , GLU C:340 , HIS C:343 , GLY C:346 , GLY C:347 , HIS C:348 , LEU C:349 , HEM C:808 , HOH C:907 , HOH C:916
BINDING SITE FOR RESIDUE HEM C 806
35
DC8
SOFTWARE
TYR C:123 , VAL C:202 , GLY C:203 , HIS C:204 , ARG C:206 , THR C:207 , LYS C:208 , ARG C:218 , TYR C:301 , CYS C:302 , CYS C:305 , HIS C:306 , CYS C:363 , HIS C:364 , CYS C:399 , GLY C:400 , GLU C:402 , ARG C:513 , CU1 C:801 , SX C:802 , HEM C:809 , HEM C:810
BINDING SITE FOR RESIDUE HEM C 807
36
DC9
SOFTWARE
ASN A:359 , GLU A:361 , ARG A:417 , HOH A:903 , HIS C:147 , TYR C:151 , TRP C:154 , HIS C:159 , VAL C:337 , SER C:338 , CYS C:339 , CYS C:342 , HIS C:343 , ILE C:357 , SER C:358 , ALA C:419 , PRO C:424 , HIS C:425 , LYS C:459 , HEM C:806 , HEM C:809 , HOH C:1009 , HOH C:1046 , HOH C:1068 , HOH C:1071 , HOH C:1109
BINDING SITE FOR RESIDUE HEM C 808
37
EC1
SOFTWARE
ARG C:158 , HIS C:159 , THR C:162 , HIS C:204 , VAL C:304 , CYS C:305 , HIS C:306 , VAL C:337 , SER C:358 , CYS C:360 , CYS C:363 , HIS C:364 , VAL C:427 , THR C:428 , SER C:454 , ARG C:513 , HEM C:807 , HEM C:808 , HEM C:810
BINDING SITE FOR RESIDUE HEM C 809
38
EC2
SOFTWARE
ARG C:206 , HIS C:364 , GLU C:402 , GLY C:403 , MET C:416 , CYS C:418 , CYS C:421 , HIS C:422 , SER C:454 , LYS C:455 , PRO C:456 , LEU C:458 , MET C:489 , PHE C:491 , ARG C:513 , ARG C:514 , HIS C:516 , TRP C:518 , HEM C:807 , HEM C:809 , HEM C:811 , HOH C:908 , HOH C:1000 , HOH C:1013 , HOH C:1026 , HOH C:1074
BINDING SITE FOR RESIDUE HEM C 810
39
EC3
SOFTWARE
HIS C:411 , MET C:416 , LYS C:460 , CYS C:462 , CYS C:465 , HIS C:466 , HIS C:488 , TRP C:518 , ARG C:553 , HEM C:810 , HEM C:812 , HOH C:989 , HOH C:1086
BINDING SITE FOR RESIDUE HEM C 811
40
EC4
SOFTWARE
CYS C:462 , THR C:463 , HIS C:466 , GLN C:469 , HIS C:479 , CYS C:484 , CYS C:487 , HIS C:488 , ILE C:520 , GLN C:606 , ASP C:657 , GLY C:658 , HIS C:663 , HEM C:811 , HOH C:947 , HOH C:998 , HOH C:1006 , HOH C:1010
BINDING SITE FOR RESIDUE HEM C 812
41
EC5
SOFTWARE
THR C:478 , HIS C:479 , SER C:486 , ALA C:561 , CYS C:562 , ALA C:575 , CYS C:578 , HIS C:579 , VAL C:602
BINDING SITE FOR RESIDUE HEM C 813
42
IC9
SOFTWARE
HEM A:813 , THR F:478 , HIS F:479 , SER F:486 , CYS F:487 , CYS F:562 , CYS F:578 , HIS F:579 , LEU F:586 , LEU F:590 , GLU F:601 , VAL F:602 , TRP F:605 , HOH F:909
BINDING SITE FOR RESIDUE HEM F 814
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (376 KB)
Header - Biol.Unit 1
Biol.Unit 2 (373 KB)
Header - Biol.Unit 2
Biol.Unit 3 (371 KB)
Header - Biol.Unit 3
Biol.Unit 4 (369 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4RKM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
