PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4RJK
Biol. Unit 2
Info
Asym.Unit (726 KB)
Biol.Unit 1 (364 KB)
Biol.Unit 2 (367 KB)
Biol.Unit 3 (359 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ACETOLACTATE SYNTHASE FROM BACILLUS SUBTILIS BOUND TO LTHDP - CRYSTAL FORM II
Authors
:
B. Sommer, H. Von Moeller, M. Haack, F. Qoura, C. Langner, G. Bourenkov T. Brueck, B. Loll
Date
:
09 Oct 14 (Deposition) - 22 Oct 14 (Release) - 07 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Biol. Unit 3: G,H (2x)
Keywords
:
Lyase, Thdp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Sommer, H. Von Moeller, M. Haack, F. Qoura, C. Langner, G. Bourenkov, D. Garbe, B. Loll, T. Bruck
Detailed Structure-Function Correlations Of Bacillus Subtilis Acetolactate Synthase.
Chembiochem V. 16 110 2015
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
2a: TETRAETHYLENE GLYCOL (PG4a)
2aa: TETRAETHYLENE GLYCOL (PG4aa)
2ab: TETRAETHYLENE GLYCOL (PG4ab)
2ac: TETRAETHYLENE GLYCOL (PG4ac)
2ad: TETRAETHYLENE GLYCOL (PG4ad)
2ae: TETRAETHYLENE GLYCOL (PG4ae)
2af: TETRAETHYLENE GLYCOL (PG4af)
2ag: TETRAETHYLENE GLYCOL (PG4ag)
2ah: TETRAETHYLENE GLYCOL (PG4ah)
2ai: TETRAETHYLENE GLYCOL (PG4ai)
2aj: TETRAETHYLENE GLYCOL (PG4aj)
2ak: TETRAETHYLENE GLYCOL (PG4ak)
2al: TETRAETHYLENE GLYCOL (PG4al)
2am: TETRAETHYLENE GLYCOL (PG4am)
2an: TETRAETHYLENE GLYCOL (PG4an)
2ao: TETRAETHYLENE GLYCOL (PG4ao)
2ap: TETRAETHYLENE GLYCOL (PG4ap)
2b: TETRAETHYLENE GLYCOL (PG4b)
2c: TETRAETHYLENE GLYCOL (PG4c)
2d: TETRAETHYLENE GLYCOL (PG4d)
2e: TETRAETHYLENE GLYCOL (PG4e)
2f: TETRAETHYLENE GLYCOL (PG4f)
2g: TETRAETHYLENE GLYCOL (PG4g)
2h: TETRAETHYLENE GLYCOL (PG4h)
2i: TETRAETHYLENE GLYCOL (PG4i)
2j: TETRAETHYLENE GLYCOL (PG4j)
2k: TETRAETHYLENE GLYCOL (PG4k)
2l: TETRAETHYLENE GLYCOL (PG4l)
2m: TETRAETHYLENE GLYCOL (PG4m)
2n: TETRAETHYLENE GLYCOL (PG4n)
2o: TETRAETHYLENE GLYCOL (PG4o)
2p: TETRAETHYLENE GLYCOL (PG4p)
2q: TETRAETHYLENE GLYCOL (PG4q)
2r: TETRAETHYLENE GLYCOL (PG4r)
2s: TETRAETHYLENE GLYCOL (PG4s)
2t: TETRAETHYLENE GLYCOL (PG4t)
2u: TETRAETHYLENE GLYCOL (PG4u)
2v: TETRAETHYLENE GLYCOL (PG4v)
2w: TETRAETHYLENE GLYCOL (PG4w)
2x: TETRAETHYLENE GLYCOL (PG4x)
2y: TETRAETHYLENE GLYCOL (PG4y)
2z: TETRAETHYLENE GLYCOL (PG4z)
3a: PYRUVIC ACID (PYRa)
3b: PYRUVIC ACID (PYRb)
3c: PYRUVIC ACID (PYRc)
3d: PYRUVIC ACID (PYRd)
3e: PYRUVIC ACID (PYRe)
4a: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (TDLa)
5a: THIAMINE DIPHOSPHATE (TPPa)
5b: THIAMINE DIPHOSPHATE (TPPb)
5c: THIAMINE DIPHOSPHATE (TPPc)
5d: THIAMINE DIPHOSPHATE (TPPd)
5e: THIAMINE DIPHOSPHATE (TPPe)
5f: THIAMINE DIPHOSPHATE (TPPf)
5g: THIAMINE DIPHOSPHATE (TPPg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
PG4
26
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PYR
4
Ligand/Ion
PYRUVIC ACID
4
TDL
-1
Ligand/Ion
3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM
5
TPP
4
Ligand/Ion
THIAMINE DIPHOSPHATE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: CC7 (SOFTWARE)
02: CC8 (SOFTWARE)
03: DC3 (SOFTWARE)
04: DC4 (SOFTWARE)
05: DC5 (SOFTWARE)
06: DC6 (SOFTWARE)
07: DC7 (SOFTWARE)
08: DC8 (SOFTWARE)
09: DC9 (SOFTWARE)
10: EC1 (SOFTWARE)
11: EC2 (SOFTWARE)
12: EC3 (SOFTWARE)
13: EC4 (SOFTWARE)
14: EC5 (SOFTWARE)
15: EC6 (SOFTWARE)
16: EC7 (SOFTWARE)
17: EC8 (SOFTWARE)
18: EC9 (SOFTWARE)
19: FC1 (SOFTWARE)
20: FC2 (SOFTWARE)
21: FC3 (SOFTWARE)
22: FC4 (SOFTWARE)
23: FC5 (SOFTWARE)
24: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC7
SOFTWARE
ARG D:254 , VAL D:388 , ASP D:389 , ASP D:390 , PG4 D:609 , ALA E:203 , LYS E:207 , THR E:304 , ASP E:322
BINDING SITE FOR RESIDUE PG4 D 603
02
CC8
SOFTWARE
GLU D:27 , HOH D:760 , GLY E:442 , LYS E:444 , PRO E:470 , ASN E:534 , PG4 E:608
BINDING SITE FOR RESIDUE PG4 D 604
03
DC3
SOFTWARE
ASP D:389 , GLU D:443 , LYS D:444 , ARG E:186 , ASP E:322
BINDING SITE FOR RESIDUE PG4 D 608
04
DC4
SOFTWARE
ASP D:390 , HIS D:391 , GLU D:413 , PG4 D:603 , ASP E:199 , HOH E:786
BINDING SITE FOR RESIDUE PG4 D 609
05
DC5
SOFTWARE
ILE E:398 , GLY E:399 , SER E:400 , HIS E:401 , GLN E:424 , LEU E:426 , GLY E:450 , ASP E:451 , GLY E:452 , GLY E:453 , ASP E:478 , THR E:480 , TYR E:481 , ASP E:482 , MET E:483 , VAL E:484 , TYR E:547 , MG E:602 , HOH E:750 , PRO F:37 , GLU F:61 , PRO F:87 , ASN F:91 , GLN F:124
BINDING SITE FOR RESIDUE TPP E 601
06
DC6
SOFTWARE
ASP E:451 , ASP E:478 , THR E:480 , TPP E:601 , HOH E:750
BINDING SITE FOR RESIDUE MG E 602
07
DC7
SOFTWARE
LYS A:207 , THR A:304 , ASP A:322 , ASN E:386 , VAL E:388 , ASP E:389 , ASP E:390
BINDING SITE FOR RESIDUE PG4 E 603
08
DC8
SOFTWARE
GLY D:442 , LYS D:444 , PRO D:470 , ASN D:534 , ALA D:535 , GLU D:536 , GLU E:27 , ASN E:184
BINDING SITE FOR RESIDUE PG4 E 604
09
DC9
SOFTWARE
LEU E:74 , LEU E:415 , VAL E:439 , LYS E:440
BINDING SITE FOR RESIDUE PG4 E 605
10
EC1
SOFTWARE
ASN E:100 , THR E:101 , ASP E:288 , ILE E:290 , ASP E:314 , ARG F:121
BINDING SITE FOR RESIDUE PG4 E 606
11
EC2
SOFTWARE
GLU E:364 , LYS E:382 , TYR E:408
BINDING SITE FOR RESIDUE PG4 E 607
12
EC3
SOFTWARE
ASP A:322 , ARG D:186 , PG4 D:604 , ASP E:389 , GLU E:443 , LYS E:444
BINDING SITE FOR RESIDUE PG4 E 608
13
EC4
SOFTWARE
GLY E:72 , ARG E:73 , GLY E:76 , PRO E:105 , ALA E:164 , PRO E:225 , HOH E:800
BINDING SITE FOR RESIDUE PG4 E 609
14
EC5
SOFTWARE
PRO E:37 , GLU E:61 , ASN E:91 , GLY F:399 , SER F:400 , HIS F:401 , GLN F:424 , LEU F:426 , GLY F:450 , ASP F:451 , GLY F:452 , GLY F:453 , ASP F:478 , THR F:480 , TYR F:481 , ASP F:482 , MET F:483 , VAL F:484 , TYR F:547 , MG F:602 , HOH F:753 , HOH F:819
BINDING SITE FOR RESIDUE TPP F 601
15
EC6
SOFTWARE
ASP F:451 , ASP F:478 , THR F:480 , TPP F:601 , HOH F:819
BINDING SITE FOR RESIDUE MG F 602
16
EC7
SOFTWARE
ARG F:73 , LEU F:74 , THR F:75 , GLY F:76 , ARG F:224 , PRO F:225 , PG4 F:606 , HOH F:770
BINDING SITE FOR RESIDUE PG4 F 603
17
EC8
SOFTWARE
LYS F:233 , GLU F:337 , ALA G:535 , GLU G:536
BINDING SITE FOR RESIDUE PG4 F 604
18
EC9
SOFTWARE
ASN F:534 , ALA F:535 , GLU F:536 , LYS G:233 , LYS G:237 , GLU G:337
BINDING SITE FOR RESIDUE PG4 F 605
19
FC1
SOFTWARE
THR F:393 , LEU F:415 , VAL F:439 , LYS F:440 , PG4 F:603
BINDING SITE FOR RESIDUE PG4 F 606
20
FC2
SOFTWARE
ALA F:161 , GLY F:162 , PRO F:191 , LYS F:192 , LEU F:193 , ASP F:328
BINDING SITE FOR RESIDUE PG4 F 607
21
FC3
SOFTWARE
LYS F:207 , ASP F:322
BINDING SITE FOR RESIDUE PG4 F 608
22
FC4
SOFTWARE
GLN E:487 , LYS E:491 , ALA F:39 , LYS F:40 , GLN F:173
BINDING SITE FOR RESIDUE PYR F 609
23
FC5
SOFTWARE
SER F:437 , HOH F:778
BINDING SITE FOR RESIDUE PYR F 610
24
GC3
SOFTWARE
ASP F:527 , ASN F:534 , GLN G:239 , ASP G:258 , GLN G:259
BINDING SITE FOR RESIDUE PYR G 607
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (726 KB)
Header - Asym.Unit
Biol.Unit 1 (364 KB)
Header - Biol.Unit 1
Biol.Unit 2 (367 KB)
Header - Biol.Unit 2
Biol.Unit 3 (359 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4RJK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help