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4RET
Biol. Unit 1
Info
Asym.Unit (932 KB)
Biol.Unit 1 (466 KB)
Biol.Unit 2 (461 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NA,K-ATPASE E2P-DIGOXIN COMPLEX WITH BOUND MAGNESIUM
Authors
:
J. L. Gregersen, M. Laursen, L. Yatime, P. Nissen, N. U. Fedosova
Date
:
23 Sep 14 (Deposition) - 28 Jan 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E,G
Biol. Unit 1: A,B,G (1x)
Biol. Unit 2: C,D,E (1x)
Keywords
:
Alpha-Helical Transmembrane Protein, Atpase, Sodium Ion Transport, Potassium Ion Transport, Atp Binding, Sodium Binding, Potassium Binding, Receptor For Cardiotonic Steroids, Phosphorylation, Glycosylation, Plasma Membrane, Multisubunit Complex, Trimeric Complex, Membrane Protein, Hydrolase-Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Laursen, J. L. Gregersen, L. Yatime, P. Nissen, N. U. Fedosova
Structures And Characterization Of Digoxin- And Bufalin-Bound Na+, K+-Atpase Compared With The Ouabain-Bound Complex.
Proc. Natl. Acad. Sci. Usa V. 112 1755 2015
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fa)
1b: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fb)
1c: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fc)
2a: CHOLESTEROL (CLRa)
2b: CHOLESTEROL (CLRb)
2c: CHOLESTEROL (CLRc)
2d: CHOLESTEROL (CLRd)
3a: DIGOXIN (DGXa)
3b: DIGOXIN (DGXb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: ASPARTYL PHOSPHATE (PHDa)
6b: ASPARTYL PHOSPHATE (PHDb)
7a: SUCROSE (SUCa)
7b: SUCROSE (SUCb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
17F
3
Ligand/Ion
O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC-9-ENOYLOXY]PROPYL}OXY)(HYDROXY)PHOSPHORYL]-L-SERINE
2
CLR
2
Ligand/Ion
CHOLESTEROL
3
DGX
1
Ligand/Ion
DIGOXIN
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PHD
1
Mod. Amino Acid
ASPARTYL PHOSPHATE
7
SUC
2
Ligand/Ion
SUCROSE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC9 (SOFTWARE)
16: CC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHD A:369 , THR A:371 , ASP A:710
BINDING SITE FOR RESIDUE MG A 1101
02
AC2
SOFTWARE
LYS A:719 , ASP A:740
BINDING SITE FOR RESIDUE MG A 1102
03
AC3
SOFTWARE
ASN A:776 , GLU A:779 , ASP A:804 , HOH A:1201 , HOH A:1202 , HOH A:1203
BINDING SITE FOR RESIDUE MG A 1103
04
AC4
SOFTWARE
PHE A:860 , GLU A:868 , THR A:979 , PHE C:938
BINDING SITE FOR RESIDUE CLR A 1104
05
AC5
SOFTWARE
LYS A:977 , PRO A:978 , THR A:979 , TYR B:68 , GLY C:941 , MET C:942 , LYS C:943 , TYR G:21
BINDING SITE FOR RESIDUE SUC A 1105
06
AC6
SOFTWARE
VAL A:937 , PHE A:938 , GLN A:939 , GLY A:941 , MET A:942 , LYS A:943 , PRO C:978 , THR C:979 , TYR D:68 , TYR E:21
BINDING SITE FOR RESIDUE SUC A 1106
07
AC7
SOFTWARE
ASP A:121 , ASN A:122 , LEU A:125 , GLU A:312 , GLY A:319 , VAL A:322 , ALA A:323 , GLU A:327 , PHE A:783 , PHE A:786 , THR A:797 , ARG A:880
BINDING SITE FOR RESIDUE DGX A 1107
08
AC8
SOFTWARE
HIS A:283 , ILE A:287 , GLY A:290 , GLU A:840 , 17F A:1109 , ARG B:27
BINDING SITE FOR RESIDUE 17F A 1108
09
AC9
SOFTWARE
HIS A:283 , HIS A:286 , ILE A:287 , 17F A:1108 , ILE B:16
BINDING SITE FOR RESIDUE 17F A 1109
10
BC1
SOFTWARE
ASN B:158 , GLU B:165 , PHE B:230 , NAG B:1002
BINDING SITE FOR RESIDUE NAG B 1001
11
BC2
SOFTWARE
NAG B:1001
BINDING SITE FOR RESIDUE NAG B 1002
12
BC3
SOFTWARE
ASN B:265
BINDING SITE FOR RESIDUE NAG B 1003
13
BC4
SOFTWARE
GLU A:840 , MET A:852 , GLU A:1013 , THR B:28 , ILE B:35 , LEU B:36 , TYR B:39 , TYR B:43
BINDING SITE FOR RESIDUE 17F B 1004
14
BC5
SOFTWARE
TRP A:924 , TYR A:963 , PRO A:978 , TRP A:981 , PHE A:982 , PHE A:985 , CLR C:2006 , VAL G:26 , GLY G:29 , GLY G:30 , PHE G:33
BINDING SITE FOR RESIDUE CLR G 1001
15
BC9
SOFTWARE
PHE A:938 , PHE C:860 , GLU C:868 , THR C:979 , PRO C:986 , THR D:53
BINDING SITE FOR RESIDUE CLR C 2004
16
CC2
SOFTWARE
TYR C:963 , PRO C:978 , TRP C:981 , PHE C:982 , VAL E:26 , GLY E:29 , GLY E:30 , CLR G:1001
BINDING SITE FOR RESIDUE CLR C 2006
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SAPs(SNPs)/Variants
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Asymmetric Unit 1
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Asym.Unit (932 KB)
Header - Asym.Unit
Biol.Unit 1 (466 KB)
Header - Biol.Unit 1
Biol.Unit 2 (461 KB)
Header - Biol.Unit 2
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