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4RDY
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VMOLAC BOUND TO 3-OXO-C10 AHL
Authors
:
J. Hiblot, J. Bzdrenga, C. Champion, G. Gotthard, D. Gonzalez, E. Chabr M. Elias
Date
:
20 Sep 14 (Deposition) - 25 Feb 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lactonase, Quorum Sensing, Aryldialkylphosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Hiblot, J. Bzdrenga, C. Champion, E. Chabriere, M. Elias
Crystal Structure Of Vmolac, A Tentative Quorum Quenching Lactonase From The Extremophilic Crenarchaeon Vulcanisaeta Moutnovskia.
Sci Rep V. 5 8372 2015
[
close entry info
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Hetero Components
(5, 23)
Info
All Hetero Components
1a: 3-OXO-N-[(3S)-2-OXOTETRAHYDROFURAN... (3M5a)
1b: 3-OXO-N-[(3S)-2-OXOTETRAHYDROFURAN... (3M5b)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3M5
2
Ligand/Ion
3-OXO-N-[(3S)-2-OXOTETRAHYDROFURAN-3-YL]DECANAMIDE
2
CO
4
Ligand/Ion
COBALT (II) ION
3
GOL
13
Ligand/Ion
GLYCEROL
4
KCX
2
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:23 , HIS A:25 , KCX A:138 , ASP A:257 , CO A:402 , 3M5 A:403 , HOH A:830
BINDING SITE FOR RESIDUE CO A 401
02
AC2
SOFTWARE
KCX A:138 , HIS A:171 , HIS A:200 , ARG A:224 , CO A:401 , 3M5 A:403 , HOH A:830
BINDING SITE FOR RESIDUE CO A 402
03
AC3
SOFTWARE
HIS A:25 , LEU A:28 , TYR A:98 , KCX A:138 , HIS A:171 , ARG A:224 , ASP A:257 , ILE A:262 , TRP A:264 , TRP A:277 , CO A:401 , CO A:402 , HOH A:830
BINDING SITE FOR RESIDUE 3M5 A 403
04
AC4
SOFTWARE
ALA A:53 , TYR A:258 , THR A:278 , MET A:279 , HOH A:554
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
LEU A:146 , ARG A:155 , ASP A:181 , ARG A:184 , GLU A:188
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
THR A:99 , TYR A:100 , TRP A:264 , HOH A:524 , HOH A:543 , HOH A:616 , PHE B:105
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
LEU A:180 , ARG A:184 , LYS A:187 , GLU A:216 , HOH A:709 , HOH A:727
BINDING SITE FOR RESIDUE GOL A 407
08
AC8
SOFTWARE
ARG A:110 , HOH A:561 , HOH A:585 , HOH A:738 , HOH A:795 , PRO B:266 , GOL B:406
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
ALA A:194 , GLY A:217 , PHE A:219 , ASP A:250 , GLN A:251 , ARG A:310 , HOH A:640
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
LEU A:40 , TYR A:41 , ILE A:262 , ASP A:263 , TYR A:265 , PRO A:267 , SO4 A:412 , HOH A:695 , HOH A:698 , ARG B:110 , HOH B:598
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
ARG A:34 , PRO A:38 , HOH A:570 , HOH A:685 , HOH A:789
BINDING SITE FOR RESIDUE GOL A 411
12
BC3
SOFTWARE
PRO A:267 , GLU A:268 , GOL A:410 , ARG B:110 , HOH B:598
BINDING SITE FOR RESIDUE SO4 A 412
13
BC4
SOFTWARE
HIS B:23 , HIS B:25 , KCX B:138 , ASP B:257 , CO B:402 , 3M5 B:403 , HOH B:829
BINDING SITE FOR RESIDUE CO B 401
14
BC5
SOFTWARE
KCX B:138 , HIS B:171 , HIS B:200 , ARG B:224 , CO B:401 , 3M5 B:403 , HOH B:829
BINDING SITE FOR RESIDUE CO B 402
15
BC6
SOFTWARE
HIS B:25 , LEU B:28 , TYR B:98 , KCX B:138 , HIS B:171 , ARG B:224 , TYR B:230 , ASP B:257 , ILE B:262 , TRP B:264 , TYR B:265 , VAL B:269 , THR B:273 , TRP B:277 , CO B:401 , CO B:402 , HOH B:829
BINDING SITE FOR RESIDUE 3M5 B 403
16
BC7
SOFTWARE
GLY B:217 , ALA B:218 , PHE B:219 , ASP B:250 , ARG B:310 , HOH B:708 , HOH B:712 , HOH B:795
BINDING SITE FOR RESIDUE GOL B 404
17
BC8
SOFTWARE
ALA B:53 , THR B:278 , MET B:279 , HOH B:560 , HOH B:631
BINDING SITE FOR RESIDUE GOL B 405
18
BC9
SOFTWARE
ARG A:110 , GOL A:408 , HOH A:561 , LEU B:40 , TYR B:41 , THR B:261 , ILE B:262 , ASP B:263 , TYR B:265 , PRO B:267 , HOH B:556 , HOH B:630
BINDING SITE FOR RESIDUE GOL B 406
19
CC1
SOFTWARE
ARG B:49 , TYR B:258 , CYS B:259 , PRO B:260 , PRO B:267 , HOH B:625 , HOH B:630 , HOH B:709 , HOH B:760
BINDING SITE FOR RESIDUE GOL B 407
20
CC2
SOFTWARE
ASP B:250 , ARG B:302 , HOH B:576
BINDING SITE FOR RESIDUE GOL B 408
21
CC3
SOFTWARE
VAL B:174 , THR B:204 , ASP B:206 , PHE B:209
BINDING SITE FOR RESIDUE SO4 B 409
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (127 KB)
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