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4RB4
Asym. Unit
Info
Asym.Unit (661 KB)
Biol.Unit 1 (647 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DODECAMERIC IRON-CONTAINING HEPTOSYLTRANSFERASE TIBC IN COMPLEX WITH ADP-D-BETA-D-HEPTOSE AT 3.9 ANGSTROM RESOLUTION
Authors
:
Q. Yao, Q. Lu, F. Shao
Date
:
12 Sep 14 (Deposition) - 05 Nov 14 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.88
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Gt-B Fold, Heptose Transfer, Tiba, Adp-D-Beta-D-Heptose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Yao, Q. Lu, X. Wan, F. Song, Y. Xu, M. Hu, A. Zamyatina, X. Liu, N. Huang P. Zhu, F. Shao
A Structural Mechanism For Bacterial Autotransporter Glycosylation By A Dodecameric Heptosyltransferase Family
Elife V. 3 2014
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHa)
1b: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHb)
1c: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHc)
1d: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHd)
1e: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHe)
1f: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHf)
1g: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHg)
1h: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHh)
1i: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHi)
1j: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHj)
1k: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHk)
1l: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN... (AQHl)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
3e: FE (III) ION (FEe)
3f: FE (III) ION (FEf)
3g: FE (III) ION (FEg)
3h: FE (III) ION (FEh)
3i: FE (III) ION (FEi)
3j: FE (III) ION (FEj)
3k: FE (III) ION (FEk)
3l: FE (III) ION (FEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AQH
12
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3R,4R,5R,6S)-6-[(1R)-1,2-DIHYDROXYETHYL]-3,4,5-TRIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGENDIPHOSPHATE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
FE
12
Ligand/Ion
FE (III) ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS K:339 , CYS K:342 , CYS K:358 , CYS K:370
BINDING SITE FOR RESIDUE FE K 501
02
AC2
SOFTWARE
THR K:107 , LEU K:108 , GLY K:109 , ALA K:110 , PHE K:187 , GLN K:224 , SER K:225 , THR K:226 , LYS K:230 , ILE K:255 , ASP K:256 , ARG K:257 , LEU K:281 , LEU K:283 , ARG K:286 , PRO K:300 , SER K:301 , GLY K:302 , TRP K:305 , GLU K:326
BINDING SITE FOR RESIDUE AQH K 502
03
AC3
SOFTWARE
CYS L:339 , CYS L:342 , CYS L:358 , CYS L:370
BINDING SITE FOR RESIDUE FE L 501
04
AC4
SOFTWARE
GLY L:106 , THR L:107 , LEU L:108 , GLY L:109 , PHE L:187 , GLN L:224 , SER L:225 , THR L:226 , ILE L:255 , ASP L:256 , ARG L:257 , GLY L:279 , ARG L:286 , PRO L:300 , SER L:301 , GLY L:302
BINDING SITE FOR RESIDUE AQH L 502
05
AC5
SOFTWARE
CYS C:339 , CYS C:342 , CYS C:358 , CYS C:370
BINDING SITE FOR RESIDUE FE C 501
06
AC6
SOFTWARE
ARG C:189 , GLU C:201
BINDING SITE FOR RESIDUE EDO C 502
07
AC7
SOFTWARE
THR C:107 , LEU C:108 , GLY C:109 , ALA C:110 , PHE C:187 , GLN C:224 , SER C:225 , THR C:226 , LYS C:230 , ARG C:257 , LEU C:283 , ARG C:286 , PRO C:300 , SER C:301 , GLY C:302 , TRP C:305 , PHE C:320 , GLU C:326
BINDING SITE FOR RESIDUE AQH C 503
08
AC8
SOFTWARE
CYS D:339 , CYS D:342 , CYS D:358 , CYS D:370
BINDING SITE FOR RESIDUE FE D 501
09
AC9
SOFTWARE
THR D:107 , LEU D:108 , GLY D:109 , PHE D:187 , GLN D:224 , SER D:225 , THR D:226 , LYS D:230 , ILE D:255 , ASP D:256 , ARG D:257 , LEU D:281 , LEU D:283 , ARG D:286 , PRO D:300 , SER D:301 , GLY D:302 , LEU D:303 , TRP D:305
BINDING SITE FOR RESIDUE AQH D 502
10
BC1
SOFTWARE
CYS E:339 , CYS E:342 , CYS E:358 , CYS E:370
BINDING SITE FOR RESIDUE FE E 501
11
BC2
SOFTWARE
THR E:107 , LEU E:108 , GLY E:109 , ALA E:110 , PHE E:187 , GLN E:224 , THR E:226 , LYS E:230 , ILE E:255 , ARG E:257 , LEU E:281 , LEU E:283 , ARG E:286 , PRO E:300 , SER E:301 , GLY E:302 , GLU E:326
BINDING SITE FOR RESIDUE AQH E 502
12
BC3
SOFTWARE
CYS H:339 , CYS H:342 , CYS H:358 , CYS H:370
BINDING SITE FOR RESIDUE FE H 501
13
BC4
SOFTWARE
LEU H:108 , GLY H:109 , ALA H:110 , PHE H:187 , GLN H:224 , SER H:225 , THR H:226 , LYS H:230 , ARG H:257 , LEU H:281 , LEU H:283 , ARG H:286 , PRO H:300 , SER H:301 , GLY H:302 , LEU H:303 , PHE H:320 , TRP H:343
BINDING SITE FOR RESIDUE AQH H 502
14
BC5
SOFTWARE
CYS B:339 , CYS B:342 , CYS B:358 , CYS B:370
BINDING SITE FOR RESIDUE FE B 501
15
BC6
SOFTWARE
THR B:107 , GLY B:109 , ALA B:110 , PHE B:187 , GLN B:224 , THR B:226 , LYS B:230 , ILE B:255 , ASP B:256 , ARG B:257 , LEU B:281 , LEU B:283 , ARG B:286 , PRO B:300 , SER B:301 , GLY B:302 , TRP B:305 , PHE B:320 , SER B:321 , GLU B:326
BINDING SITE FOR RESIDUE AQH B 502
16
BC7
SOFTWARE
CYS F:339 , CYS F:342 , CYS F:358 , CYS F:370
BINDING SITE FOR RESIDUE FE F 501
17
BC8
SOFTWARE
THR F:107 , LEU F:108 , GLY F:109 , ALA F:110 , PHE F:187 , GLN F:224 , SER F:225 , THR F:226 , LYS F:230 , ASP F:256 , ARG F:257 , LEU F:281 , LEU F:283 , ARG F:286 , PRO F:300 , SER F:301 , GLY F:302 , TRP F:305 , GLU F:326
BINDING SITE FOR RESIDUE AQH F 502
18
BC9
SOFTWARE
CYS G:339 , CYS G:342 , CYS G:358 , CYS G:370
BINDING SITE FOR RESIDUE FE G 501
19
CC1
SOFTWARE
THR G:107 , LEU G:108 , ALA G:110 , PHE G:187 , THR G:226 , LYS G:230 , ASP G:256 , ARG G:257 , LEU G:281 , ARG G:286 , PRO G:300 , SER G:301 , GLY G:302 , GLU G:326 , TRP G:343
BINDING SITE FOR RESIDUE AQH G 502
20
CC2
SOFTWARE
CYS I:339 , CYS I:342 , CYS I:358 , CYS I:370
BINDING SITE FOR RESIDUE FE I 501
21
CC3
SOFTWARE
ARG I:189 , GLU I:201
BINDING SITE FOR RESIDUE EDO I 502
22
CC4
SOFTWARE
THR I:107 , LEU I:108 , GLY I:109 , ALA I:110 , PHE I:187 , GLN I:224 , SER I:225 , THR I:226 , LYS I:230 , ASP I:256 , ARG I:257 , ARG I:286 , PRO I:300 , SER I:301 , GLY I:302 , PHE I:320
BINDING SITE FOR RESIDUE AQH I 503
23
CC5
SOFTWARE
CYS J:339 , CYS J:342 , CYS J:358 , CYS J:370
BINDING SITE FOR RESIDUE FE J 501
24
CC6
SOFTWARE
ARG J:189 , ARG J:200 , GLU J:201
BINDING SITE FOR RESIDUE EDO J 502
25
CC7
SOFTWARE
THR J:107 , LEU J:108 , GLY J:109 , ALA J:110 , PHE J:187 , THR J:226 , LYS J:230 , ARG J:257 , LEU J:281 , ARG J:286 , PRO J:300 , SER J:301 , GLY J:302 , LEU J:303 , TRP J:305 , GLU J:326 , TRP J:343
BINDING SITE FOR RESIDUE AQH J 503
26
CC8
SOFTWARE
CYS A:339 , CYS A:342 , CYS A:358 , CYS A:370
BINDING SITE FOR RESIDUE FE A 501
27
CC9
SOFTWARE
THR A:107 , GLY A:109 , ALA A:110 , PHE A:187 , SER A:225 , THR A:226 , LYS A:230 , ARG A:257 , LEU A:281 , ARG A:286 , PRO A:300 , SER A:301 , GLY A:302 , GLU A:326
BINDING SITE FOR RESIDUE AQH A 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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