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4R7M
Biol. Unit 2
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Asym.Unit (1.9 MB)
Biol.Unit 1 (962 KB)
Biol.Unit 2 (964 KB)
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Title
:
STRUCTURE OF THE M17 LEUCYL AMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A HYDROXAMIC ACID-BASED INHIBITOR
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
28 Aug 14 (Deposition) - 29 Oct 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Mistry, N. Drinkwater, C. Ruggeri, K. K. Sivaraman, S. Loganathan, S. Fletcher, M. Drag, A. Paiardini, V. M. Avery, P. J. Scammells, S. Mcgowan
Two-Pronged Attack: Dual Inhibition Of Plasmodium Falciparu M1 And M17 Metalloaminopeptidases By A Novel Series Of Hydroxamic Acid-Based Inhibitors.
J. Med. Chem. V. 57 9168 2014
[
close entry info
]
Hetero Components
(5, 22)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
2a: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWa)
2b: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWb)
2c: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWc)
2d: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWd)
2e: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWe)
2f: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWf)
2g: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWg)
2h: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWh)
2i: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWi)
2j: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWj)
2k: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWk)
2l: 4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (3MWl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
4
Ligand/Ion
PENTAETHYLENE GLYCOL
2
3MW
6
Ligand/Ion
4-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H-PYRAZOL-1-YL)PHENYL]ETHYL}BENZAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
5
SO4
5
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: DC8 (SOFTWARE)
02: DC9 (SOFTWARE)
03: EC1 (SOFTWARE)
04: EC2 (SOFTWARE)
05: EC3 (SOFTWARE)
06: EC4 (SOFTWARE)
07: EC5 (SOFTWARE)
08: EC6 (SOFTWARE)
09: EC7 (SOFTWARE)
10: EC8 (SOFTWARE)
11: EC9 (SOFTWARE)
12: FC1 (SOFTWARE)
13: FC2 (SOFTWARE)
14: FC3 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
18: FC7 (SOFTWARE)
19: FC8 (SOFTWARE)
20: FC9 (SOFTWARE)
21: GC1 (SOFTWARE)
22: GC2 (SOFTWARE)
23: GC3 (SOFTWARE)
24: GC4 (SOFTWARE)
25: GC5 (SOFTWARE)
26: GC6 (SOFTWARE)
27: GC7 (SOFTWARE)
28: GC8 (SOFTWARE)
29: GC9 (SOFTWARE)
30: HC1 (SOFTWARE)
31: HC2 (SOFTWARE)
32: HC3 (SOFTWARE)
33: HC4 (SOFTWARE)
34: HC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
DC8
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:1003 , 3MW G:1008
BINDING SITE FOR RESIDUE ZN G 1001
02
DC9
SOFTWARE
LYS G:374 , ALA G:460 , GLU G:461 , GLY G:462 , ARG G:463 , LEU G:487 , 3MW G:1008
BINDING SITE FOR RESIDUE CO3 G 1002
03
EC1
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:1001 , 3MW G:1008
BINDING SITE FOR RESIDUE ZN G 1003
04
EC2
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
BINDING SITE FOR RESIDUE SO4 G 1004
05
EC3
SOFTWARE
TYR G:244 , ASP G:249 , TYR G:292 , SER G:295 , LYS G:587 , TYR I:541
BINDING SITE FOR RESIDUE SO4 G 1005
06
EC4
SOFTWARE
TYR G:103 , ASN G:104 , HIS G:108 , LYS G:320 , TYR G:411 , 1PE G:1007
BINDING SITE FOR RESIDUE 1PE G 1006
07
EC5
SOFTWARE
TYR G:103 , ASN G:104 , GLU G:316 , LYS G:320 , 1PE G:1006
BINDING SITE FOR RESIDUE 1PE G 1007
08
EC6
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:392 , MET G:396 , PHE G:398 , ASP G:459 , GLU G:461 , ARG G:463 , LEU G:487 , THR G:488 , GLY G:489 , SER G:554 , ALA G:577 , ZN G:1001 , CO3 G:1002 , ZN G:1003
BINDING SITE FOR RESIDUE 3MW G 1008
09
EC7
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:1003 , 3MW H:1005
BINDING SITE FOR RESIDUE ZN H 1001
10
EC8
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , 3MW H:1005
BINDING SITE FOR RESIDUE CO3 H 1002
11
EC9
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:1001 , 3MW H:1005
BINDING SITE FOR RESIDUE ZN H 1003
12
FC1
SOFTWARE
ASN B:104 , TYR H:103 , ASN H:104 , LYS H:320 , TYR H:411
BINDING SITE FOR RESIDUE 1PE H 1004
13
FC2
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , MET H:392 , PHE H:398 , ASN H:457 , ASP H:459 , GLU H:461 , LEU H:487 , THR H:488 , GLY H:489 , ZN H:1001 , CO3 H:1002 , ZN H:1003
BINDING SITE FOR RESIDUE 3MW H 1005
14
FC3
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:1003 , 3MW I:1004
BINDING SITE FOR RESIDUE ZN I 1001
15
FC4
SOFTWARE
LYS I:374 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , 3MW I:1004
BINDING SITE FOR RESIDUE CO3 I 1002
16
FC5
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:1001 , 3MW I:1004
BINDING SITE FOR RESIDUE ZN I 1003
17
FC6
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , MET I:392 , PHE I:398 , ASP I:399 , ASP I:459 , GLU I:461 , LEU I:487 , THR I:488 , GLY I:489 , SER I:554 , ZN I:1001 , CO3 I:1002 , ZN I:1003
BINDING SITE FOR RESIDUE 3MW I 1004
18
FC7
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:1003 , 3MW J:1005
BINDING SITE FOR RESIDUE ZN J 1001
19
FC8
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , 3MW J:1005
BINDING SITE FOR RESIDUE CO3 J 1002
20
FC9
SOFTWARE
ASP J:379 , LYS J:386 , ASP J:459 , GLU J:461 , ZN J:1001 , 3MW J:1005
BINDING SITE FOR RESIDUE ZN J 1003
21
GC1
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
BINDING SITE FOR RESIDUE SO4 J 1004
22
GC2
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , MET J:392 , PHE J:398 , ASN J:457 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ALA J:577 , ZN J:1001 , CO3 J:1002 , ZN J:1003
BINDING SITE FOR RESIDUE 3MW J 1005
23
GC3
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:1003 , 3MW K:1006
BINDING SITE FOR RESIDUE ZN K 1001
24
GC4
SOFTWARE
LYS K:374 , ALA K:460 , GLU K:461 , GLY K:462 , ARG K:463 , LEU K:487 , 3MW K:1006
BINDING SITE FOR RESIDUE CO3 K 1002
25
GC5
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:1001 , 3MW K:1006
BINDING SITE FOR RESIDUE ZN K 1003
26
GC6
SOFTWARE
TYR K:103 , ASN K:104
BINDING SITE FOR RESIDUE SO4 K 1004
27
GC7
SOFTWARE
TYR K:103 , HIS K:108 , PHE K:289 , LYS K:320 , TYR K:411
BINDING SITE FOR RESIDUE 1PE K 1005
28
GC8
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , MET K:392 , PHE K:398 , ASN K:457 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , ZN K:1001 , CO3 K:1002 , ZN K:1003
BINDING SITE FOR RESIDUE 3MW K 1006
29
GC9
SOFTWARE
GLY K:390 , SER K:391 , MET K:392
BINDING SITE FOR RESIDUE DMS K 1007
30
HC1
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:1003 , 3MW L:1005
BINDING SITE FOR RESIDUE ZN L 1001
31
HC2
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , 3MW L:1005
BINDING SITE FOR RESIDUE CO3 L 1002
32
HC3
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:1001 , 3MW L:1005
BINDING SITE FOR RESIDUE ZN L 1003
33
HC4
SOFTWARE
GLU L:102 , TYR L:103 , ASN L:104
BINDING SITE FOR RESIDUE SO4 L 1004
34
HC5
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , MET L:392 , PHE L:398 , ASN L:457 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , LEU L:492 , ZN L:1001 , CO3 L:1002 , ZN L:1003
BINDING SITE FOR RESIDUE 3MW L 1005
[
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]
SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (1.9 MB)
Header - Asym.Unit
Biol.Unit 1 (962 KB)
Header - Biol.Unit 1
Biol.Unit 2 (964 KB)
Header - Biol.Unit 2
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