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4R76
Biol. Unit 2
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Asym.Unit (1.9 MB)
Biol.Unit 1 (988 KB)
Biol.Unit 2 (990 KB)
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Title
:
STRUCTURE OF THE M17 LEUCYL AMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A HYDROXAMIC ACID-BASED INHIBITOR
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
27 Aug 14 (Deposition) - 29 Oct 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Mistry, N. Drinkwater, C. Ruggeri, K. K. Sivaraman, S. Loganathan, S. Fletcher, M. Drag, A. Paiardini, V. M. Avery, P. J. Scammells, S. Mcgowan
Two-Pronged Attack: Dual Inhibition Of Plasmodium Falciparu M1 And M17 Metalloaminopeptidases By A Novel Series Of Hydroxamic Acid-Based Inhibitors.
J. Med. Chem. V. 57 9168 2014
[
close entry info
]
Hetero Components
(4, 22)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
2d: CARBONATE ION (CO3d)
2e: CARBONATE ION (CO3e)
2f: CARBONATE ION (CO3f)
2g: CARBONATE ION (CO3g)
2h: CARBONATE ION (CO3h)
2i: CARBONATE ION (CO3i)
2j: CARBONATE ION (CO3j)
2k: CARBONATE ION (CO3k)
2l: CARBONATE ION (CO3l)
3a: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xa)
3b: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xb)
3c: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xc)
3d: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xd)
3e: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xe)
3f: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xf)
3g: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xg)
3h: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xh)
3i: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xi)
3j: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xj)
3k: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xk)
3l: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
8
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CO3
6
Ligand/Ion
CARBONATE ION
3
R5X
6
Ligand/Ion
3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H-PYRAZOL-1-YL)PHENYL]ETHYL}BENZAMIDE
4
SO4
2
Ligand/Ion
SULFATE ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: EC1 (SOFTWARE)
02: EC2 (SOFTWARE)
03: EC3 (SOFTWARE)
04: EC4 (SOFTWARE)
05: EC5 (SOFTWARE)
06: EC6 (SOFTWARE)
07: EC7 (SOFTWARE)
08: EC8 (SOFTWARE)
09: EC9 (SOFTWARE)
10: FC1 (SOFTWARE)
11: FC2 (SOFTWARE)
12: FC3 (SOFTWARE)
13: FC4 (SOFTWARE)
14: FC5 (SOFTWARE)
15: FC6 (SOFTWARE)
16: FC7 (SOFTWARE)
17: FC8 (SOFTWARE)
18: FC9 (SOFTWARE)
19: GC1 (SOFTWARE)
20: GC2 (SOFTWARE)
21: GC3 (SOFTWARE)
22: GC4 (SOFTWARE)
23: GC5 (SOFTWARE)
24: GC6 (SOFTWARE)
25: GC7 (SOFTWARE)
26: GC8 (SOFTWARE)
27: GC9 (SOFTWARE)
28: HC1 (SOFTWARE)
29: HC2 (SOFTWARE)
30: HC3 (SOFTWARE)
31: HC4 (SOFTWARE)
32: HC5 (SOFTWARE)
33: HC6 (SOFTWARE)
34: HC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC1
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:1003 , R5X G:1004 , HOH G:1148
BINDING SITE FOR RESIDUE ZN G 1001
02
EC2
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , R5X G:1004
BINDING SITE FOR RESIDUE CO3 G 1002
03
EC3
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:1001 , R5X G:1004
BINDING SITE FOR RESIDUE ZN G 1003
04
EC4
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:396 , ASN G:457 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , LEU G:492 , SER G:554 , ALA G:577 , ZN G:1001 , CO3 G:1002 , ZN G:1003 , HOH G:1148
BINDING SITE FOR RESIDUE R5X G 1004
05
EC5
SOFTWARE
TYR G:103 , HIS G:108 , PHE G:289 , LYS G:320 , TYR G:411
BINDING SITE FOR RESIDUE 1PE G 1005
06
EC6
SOFTWARE
TYR G:103 , GLU G:316 , GLN G:319 , LYS G:320 , HOH G:1244
BINDING SITE FOR RESIDUE 1PE G 1006
07
EC7
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:1003 , R5X H:1004 , HOH H:1233
BINDING SITE FOR RESIDUE ZN H 1001
08
EC8
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , R5X H:1004
BINDING SITE FOR RESIDUE CO3 H 1002
09
EC9
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:1001 , R5X H:1004
BINDING SITE FOR RESIDUE ZN H 1003
10
FC1
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASN H:457 , ASP H:459 , GLU H:461 , LEU H:487 , THR H:488 , GLY H:489 , ALA H:577 , ZN H:1001 , CO3 H:1002 , ZN H:1003 , HOH H:1136 , HOH H:1233
BINDING SITE FOR RESIDUE R5X H 1004
11
FC2
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
BINDING SITE FOR RESIDUE SO4 H 1005
12
FC3
SOFTWARE
TYR H:103 , ASN H:104 , HIS H:108 , LYS H:320 , TYR H:411
BINDING SITE FOR RESIDUE 1PE H 1006
13
FC4
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:1003 , R5X I:1004 , HOH I:1242
BINDING SITE FOR RESIDUE ZN I 1001
14
FC5
SOFTWARE
LYS I:374 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , R5X I:1004
BINDING SITE FOR RESIDUE CO3 I 1002
15
FC6
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:1001 , R5X I:1004
BINDING SITE FOR RESIDUE ZN I 1003
16
FC7
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , MET I:392 , PHE I:398 , ASP I:459 , GLU I:461 , ARG I:463 , LEU I:487 , THR I:488 , GLY I:489 , ALA I:577 , ZN I:1001 , CO3 I:1002 , ZN I:1003 , HOH I:1242
BINDING SITE FOR RESIDUE R5X I 1004
17
FC8
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320
BINDING SITE FOR RESIDUE 1PE I 1005
18
FC9
SOFTWARE
TYR I:103 , ASN I:104 , PHE I:289 , LYS I:320 , TYR I:411
BINDING SITE FOR RESIDUE 1PE I 1006
19
GC1
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:1003 , R5X J:1004 , HOH J:1271
BINDING SITE FOR RESIDUE ZN J 1001
20
GC2
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , R5X J:1004
BINDING SITE FOR RESIDUE CO3 J 1002
21
GC3
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:1001 , R5X J:1004
BINDING SITE FOR RESIDUE ZN J 1003
22
GC4
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , MET J:392 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ALA J:577 , ZN J:1001 , CO3 J:1002 , ZN J:1003
BINDING SITE FOR RESIDUE R5X J 1004
23
GC5
SOFTWARE
TYR J:103 , HIS J:108 , PHE J:289 , TYR J:411
BINDING SITE FOR RESIDUE 1PE J 1005
24
GC6
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:1003 , R5X K:1004 , HOH K:1255
BINDING SITE FOR RESIDUE ZN K 1001
25
GC7
SOFTWARE
LYS K:374 , ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , R5X K:1004
BINDING SITE FOR RESIDUE CO3 K 1002
26
GC8
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:1001 , R5X K:1004
BINDING SITE FOR RESIDUE ZN K 1003
27
GC9
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , MET K:392 , PHE K:398 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , LEU K:492 , SER K:554 , ZN K:1001 , CO3 K:1002 , ZN K:1003 , HOH K:1181 , HOH K:1255 , HOH K:1262
BINDING SITE FOR RESIDUE R5X K 1004
28
HC1
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
BINDING SITE FOR RESIDUE SO4 K 1005
29
HC2
SOFTWARE
TYR K:103 , HIS K:108 , PHE K:289 , TYR K:411
BINDING SITE FOR RESIDUE 1PE K 1006
30
HC3
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:1003 , R5X L:1004 , HOH L:1240
BINDING SITE FOR RESIDUE ZN L 1001
31
HC4
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , R5X L:1004
BINDING SITE FOR RESIDUE CO3 L 1002
32
HC5
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:1001 , R5X L:1004
BINDING SITE FOR RESIDUE ZN L 1003
33
HC6
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , PHE L:398 , ASN L:457 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , SER L:554 , ALA L:577 , ZN L:1001 , CO3 L:1002 , ZN L:1003 , HOH L:1240
BINDING SITE FOR RESIDUE R5X L 1004
34
HC7
SOFTWARE
TYR L:103 , ASN L:104 , HIS L:108 , TYR L:411
BINDING SITE FOR RESIDUE 1PE L 1005
[
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]
SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Asym.Unit (1.9 MB)
Header - Asym.Unit
Biol.Unit 1 (988 KB)
Header - Biol.Unit 1
Biol.Unit 2 (990 KB)
Header - Biol.Unit 2
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