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4R76
Asym. Unit
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (988 KB)
Biol.Unit 2 (990 KB)
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(1)
Title
:
STRUCTURE OF THE M17 LEUCYL AMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A HYDROXAMIC ACID-BASED INHIBITOR
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
27 Aug 14 (Deposition) - 29 Oct 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Mistry, N. Drinkwater, C. Ruggeri, K. K. Sivaraman, S. Loganathan, S. Fletcher, M. Drag, A. Paiardini, V. M. Avery, P. J. Scammells, S. Mcgowan
Two-Pronged Attack: Dual Inhibition Of Plasmodium Falciparu M1 And M17 Metalloaminopeptidases By A Novel Series Of Hydroxamic Acid-Based Inhibitors.
J. Med. Chem. V. 57 9168 2014
[
close entry info
]
Hetero Components
(5, 70)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
2d: CARBONATE ION (CO3d)
2e: CARBONATE ION (CO3e)
2f: CARBONATE ION (CO3f)
2g: CARBONATE ION (CO3g)
2h: CARBONATE ION (CO3h)
2i: CARBONATE ION (CO3i)
2j: CARBONATE ION (CO3j)
2k: CARBONATE ION (CO3k)
2l: CARBONATE ION (CO3l)
3a: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xa)
3b: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xb)
3c: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xc)
3d: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xd)
3e: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xe)
3f: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xf)
3g: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xg)
3h: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xh)
3i: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xi)
3j: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xj)
3k: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xk)
3l: 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2... (R5Xl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
15
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CO3
12
Ligand/Ion
CARBONATE ION
3
R5X
12
Ligand/Ion
3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H-PYRAZOL-1-YL)PHENYL]ETHYL}BENZAMIDE
4
SO4
7
Ligand/Ion
SULFATE ION
5
ZN
24
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(70, 70)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , ZN A:1003 , R5X A:1004 , HOH A:1270
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
LYS A:374 , ALA A:460 , GLY A:462 , ARG A:463 , LEU A:487 , R5X A:1004
BINDING SITE FOR RESIDUE CO3 A 1002
03
AC3
SOFTWARE
ASP A:379 , ASP A:459 , GLU A:461 , ZN A:1001 , R5X A:1004
BINDING SITE FOR RESIDUE ZN A 1003
04
AC4
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , MET A:392 , ASP A:459 , GLU A:461 , LEU A:487 , THR A:488 , GLY A:489 , LEU A:492 , ALA A:577 , ZN A:1001 , CO3 A:1002 , ZN A:1003 , HOH A:1144 , HOH A:1270
BINDING SITE FOR RESIDUE R5X A 1004
05
AC5
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , SER C:435 , LYS C:436
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
TYR A:244 , ASP A:249 , TYR A:292 , SER A:295 , HOH A:1174 , TYR C:541
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , ZN B:1003 , R5X B:1004 , HOH B:1225
BINDING SITE FOR RESIDUE ZN B 1001
08
AC8
SOFTWARE
LYS B:374 , ALA B:460 , GLU B:461 , GLY B:462 , ARG B:463 , LEU B:487 , R5X B:1004
BINDING SITE FOR RESIDUE CO3 B 1002
09
AC9
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , ZN B:1001 , R5X B:1004
BINDING SITE FOR RESIDUE ZN B 1003
10
BC1
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , PHE B:398 , ASN B:457 , ASP B:459 , GLU B:461 , LEU B:487 , THR B:488 , GLY B:489 , ALA B:577 , ZN B:1001 , CO3 B:1002 , ZN B:1003 , HOH B:1134 , HOH B:1225
BINDING SITE FOR RESIDUE R5X B 1004
11
BC2
SOFTWARE
TYR B:103 , GLU B:316 , LYS B:320 , 1PE B:1006
BINDING SITE FOR RESIDUE 1PE B 1005
12
BC3
SOFTWARE
TYR B:103 , HIS B:108 , PHE B:289 , LYS B:320 , TYR B:411 , 1PE B:1005
BINDING SITE FOR RESIDUE 1PE B 1006
13
BC4
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , ZN C:1003 , R5X C:1004 , HOH C:1255
BINDING SITE FOR RESIDUE ZN C 1001
14
BC5
SOFTWARE
LYS C:374 , ALA C:460 , GLY C:462 , ARG C:463 , LEU C:487 , R5X C:1004
BINDING SITE FOR RESIDUE CO3 C 1002
15
BC6
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , ZN C:1001 , R5X C:1004
BINDING SITE FOR RESIDUE ZN C 1003
16
BC7
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , MET C:392 , PHE C:398 , ASN C:457 , ASP C:459 , GLU C:461 , LEU C:487 , THR C:488 , GLY C:489 , SER C:554 , ALA C:577 , ZN C:1001 , CO3 C:1002 , ZN C:1003 , HOH C:1251 , HOH C:1255
BINDING SITE FOR RESIDUE R5X C 1004
17
BC8
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , ZN D:1003 , R5X D:1004 , HOH D:1274
BINDING SITE FOR RESIDUE ZN D 1001
18
BC9
SOFTWARE
LYS D:374 , ALA D:460 , GLY D:462 , ARG D:463 , LEU D:487 , R5X D:1004
BINDING SITE FOR RESIDUE CO3 D 1002
19
CC1
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , ZN D:1001 , R5X D:1004
BINDING SITE FOR RESIDUE ZN D 1003
20
CC2
SOFTWARE
LYS D:374 , ASP D:379 , LYS D:386 , ASN D:457 , ASP D:459 , GLU D:461 , LEU D:487 , THR D:488 , GLY D:489 , LEU D:492 , SER D:554 , ALA D:577 , ZN D:1001 , CO3 D:1002 , ZN D:1003 , HOH D:1274
BINDING SITE FOR RESIDUE R5X D 1004
21
CC3
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , ZN E:1003 , R5X E:1004 , HOH E:1157
BINDING SITE FOR RESIDUE ZN E 1001
22
CC4
SOFTWARE
LYS E:374 , ALA E:460 , GLY E:462 , ARG E:463 , LEU E:487 , R5X E:1004
BINDING SITE FOR RESIDUE CO3 E 1002
23
CC5
SOFTWARE
ASP E:379 , LYS E:386 , ASP E:459 , GLU E:461 , ZN E:1001 , R5X E:1004
BINDING SITE FOR RESIDUE ZN E 1003
24
CC6
SOFTWARE
LYS E:374 , ASP E:379 , LYS E:386 , PHE E:398 , ASN E:457 , ASP E:459 , GLU E:461 , LEU E:487 , THR E:488 , GLY E:489 , ZN E:1001 , CO3 E:1002 , ZN E:1003 , HOH E:1141 , HOH E:1157
BINDING SITE FOR RESIDUE R5X E 1004
25
CC7
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
BINDING SITE FOR RESIDUE SO4 E 1005
26
CC8
SOFTWARE
TYR E:103 , HIS E:108 , LEU E:321 , TYR E:411
BINDING SITE FOR RESIDUE 1PE E 1006
27
CC9
SOFTWARE
ASN E:511
BINDING SITE FOR RESIDUE 1PE E 1007
28
DC1
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , ZN F:1003 , R5X F:1004 , HOH F:1219
BINDING SITE FOR RESIDUE ZN F 1001
29
DC2
SOFTWARE
GLU E:102 , TYR E:103 , ASN E:104 , HOH E:1178
BINDING SITE FOR RESIDUE SO4 E 1008
30
DC3
SOFTWARE
LYS F:374 , ALA F:460 , GLY F:462 , ARG F:463 , LEU F:487 , R5X F:1004
BINDING SITE FOR RESIDUE CO3 F 1002
31
DC4
SOFTWARE
ASP F:379 , ASP F:459 , GLU F:461 , ZN F:1001 , R5X F:1004
BINDING SITE FOR RESIDUE ZN F 1003
32
DC5
SOFTWARE
LYS F:374 , ASP F:379 , LYS F:386 , MET F:392 , PHE F:398 , ASN F:457 , ASP F:459 , GLU F:461 , LEU F:487 , THR F:488 , GLY F:489 , LEU F:492 , ALA F:577 , ZN F:1001 , CO3 F:1002 , ZN F:1003 , HOH F:1219
BINDING SITE FOR RESIDUE R5X F 1004
33
DC6
SOFTWARE
TYR F:103 , LYS F:320 , SO4 F:1008
BINDING SITE FOR RESIDUE 1PE F 1005
34
DC7
SOFTWARE
TYR F:103 , ASN F:104 , HIS F:108 , LYS F:320 , TYR F:411 , HOH F:1142
BINDING SITE FOR RESIDUE 1PE F 1006
35
DC8
SOFTWARE
SER F:93 , LEU F:94 , ASP F:95
BINDING SITE FOR RESIDUE 1PE F 1007
36
DC9
SOFTWARE
ILE F:101 , TYR F:103 , ASN F:104 , 1PE F:1005 , HOH F:1172
BINDING SITE FOR RESIDUE SO4 F 1008
37
EC1
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:1003 , R5X G:1004 , HOH G:1148
BINDING SITE FOR RESIDUE ZN G 1001
38
EC2
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , R5X G:1004
BINDING SITE FOR RESIDUE CO3 G 1002
39
EC3
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:1001 , R5X G:1004
BINDING SITE FOR RESIDUE ZN G 1003
40
EC4
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:396 , ASN G:457 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , LEU G:492 , SER G:554 , ALA G:577 , ZN G:1001 , CO3 G:1002 , ZN G:1003 , HOH G:1148
BINDING SITE FOR RESIDUE R5X G 1004
41
EC5
SOFTWARE
TYR G:103 , HIS G:108 , PHE G:289 , LYS G:320 , TYR G:411
BINDING SITE FOR RESIDUE 1PE G 1005
42
EC6
SOFTWARE
TYR G:103 , GLU G:316 , GLN G:319 , LYS G:320 , HOH G:1244
BINDING SITE FOR RESIDUE 1PE G 1006
43
EC7
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:1003 , R5X H:1004 , HOH H:1233
BINDING SITE FOR RESIDUE ZN H 1001
44
EC8
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , R5X H:1004
BINDING SITE FOR RESIDUE CO3 H 1002
45
EC9
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:1001 , R5X H:1004
BINDING SITE FOR RESIDUE ZN H 1003
46
FC1
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASN H:457 , ASP H:459 , GLU H:461 , LEU H:487 , THR H:488 , GLY H:489 , ALA H:577 , ZN H:1001 , CO3 H:1002 , ZN H:1003 , HOH H:1136 , HOH H:1233
BINDING SITE FOR RESIDUE R5X H 1004
47
FC2
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
BINDING SITE FOR RESIDUE SO4 H 1005
48
FC3
SOFTWARE
TYR H:103 , ASN H:104 , HIS H:108 , LYS H:320 , TYR H:411
BINDING SITE FOR RESIDUE 1PE H 1006
49
FC4
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:1003 , R5X I:1004 , HOH I:1242
BINDING SITE FOR RESIDUE ZN I 1001
50
FC5
SOFTWARE
LYS I:374 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , R5X I:1004
BINDING SITE FOR RESIDUE CO3 I 1002
51
FC6
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:1001 , R5X I:1004
BINDING SITE FOR RESIDUE ZN I 1003
52
FC7
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , MET I:392 , PHE I:398 , ASP I:459 , GLU I:461 , ARG I:463 , LEU I:487 , THR I:488 , GLY I:489 , ALA I:577 , ZN I:1001 , CO3 I:1002 , ZN I:1003 , HOH I:1242
BINDING SITE FOR RESIDUE R5X I 1004
53
FC8
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320
BINDING SITE FOR RESIDUE 1PE I 1005
54
FC9
SOFTWARE
TYR I:103 , ASN I:104 , PHE I:289 , LYS I:320 , TYR I:411
BINDING SITE FOR RESIDUE 1PE I 1006
55
GC1
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:1003 , R5X J:1004 , HOH J:1271
BINDING SITE FOR RESIDUE ZN J 1001
56
GC2
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , R5X J:1004
BINDING SITE FOR RESIDUE CO3 J 1002
57
GC3
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:1001 , R5X J:1004
BINDING SITE FOR RESIDUE ZN J 1003
58
GC4
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , MET J:392 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ALA J:577 , ZN J:1001 , CO3 J:1002 , ZN J:1003
BINDING SITE FOR RESIDUE R5X J 1004
59
GC5
SOFTWARE
TYR J:103 , HIS J:108 , PHE J:289 , TYR J:411
BINDING SITE FOR RESIDUE 1PE J 1005
60
GC6
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:1003 , R5X K:1004 , HOH K:1255
BINDING SITE FOR RESIDUE ZN K 1001
61
GC7
SOFTWARE
LYS K:374 , ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , R5X K:1004
BINDING SITE FOR RESIDUE CO3 K 1002
62
GC8
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:1001 , R5X K:1004
BINDING SITE FOR RESIDUE ZN K 1003
63
GC9
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , MET K:392 , PHE K:398 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , LEU K:492 , SER K:554 , ZN K:1001 , CO3 K:1002 , ZN K:1003 , HOH K:1181 , HOH K:1255 , HOH K:1262
BINDING SITE FOR RESIDUE R5X K 1004
64
HC1
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
BINDING SITE FOR RESIDUE SO4 K 1005
65
HC2
SOFTWARE
TYR K:103 , HIS K:108 , PHE K:289 , TYR K:411
BINDING SITE FOR RESIDUE 1PE K 1006
66
HC3
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:1003 , R5X L:1004 , HOH L:1240
BINDING SITE FOR RESIDUE ZN L 1001
67
HC4
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , R5X L:1004
BINDING SITE FOR RESIDUE CO3 L 1002
68
HC5
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:1001 , R5X L:1004
BINDING SITE FOR RESIDUE ZN L 1003
69
HC6
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , PHE L:398 , ASN L:457 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , SER L:554 , ALA L:577 , ZN L:1001 , CO3 L:1002 , ZN L:1003 , HOH L:1240
BINDING SITE FOR RESIDUE R5X L 1004
70
HC7
SOFTWARE
TYR L:103 , ASN L:104 , HIS L:108 , TYR L:411
BINDING SITE FOR RESIDUE 1PE L 1005
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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Atom Selection
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Asymmetric Unit 1
Rendering
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Molecule Coloring
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by Chain (Asym. Unit)
by Chain (Biol. Unit)
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by Atom (CPK)
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1.9 MB)
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Biol.Unit 1 (988 KB)
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