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4R6T
Biol. Unit 2
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Asym.Unit (2.0 MB)
Biol.Unit 1 (1011 KB)
Biol.Unit 2 (1012 KB)
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(1)
Title
:
STRUCTURE OF THE M17 LEUCYL AMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A HYDROXAMIC ACID-BASED INHIBITOR
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
26 Aug 14 (Deposition) - 29 Oct 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Mistry, N. Drinkwater, C. Ruggeri, K. K. Sivaraman, S. Loganathan, S. Fletcher, M. Drag, A. Paiardini, V. M. Avery, P. J. Scammells, S. Mcgowan
Two-Pronged Attack: Dual Inhibition Of Plasmodium Falciparu M1 And M17 Metalloaminopeptidases By A Novel Series Of Hydroxamic Acid-Based Inhibitors.
J. Med. Chem. V. 57 9168 2014
[
close entry info
]
Hetero Components
(5, 32)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
2d: CARBONATE ION (CO3d)
2e: CARBONATE ION (CO3e)
2f: CARBONATE ION (CO3f)
2g: CARBONATE ION (CO3g)
2h: CARBONATE ION (CO3h)
2i: CARBONATE ION (CO3i)
2j: CARBONATE ION (CO3j)
2k: CARBONATE ION (CO3k)
2l: CARBONATE ION (CO3l)
3a: DIMETHYL SULFOXIDE (DMSa)
4a: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Ta)
4b: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tb)
4c: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tc)
4d: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Td)
4e: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Te)
4f: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tf)
4g: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tg)
4h: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Th)
4i: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Ti)
4j: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tj)
4k: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tk)
4l: TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-... (R5Tl)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
8
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CO3
6
Ligand/Ion
CARBONATE ION
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
R5T
6
Ligand/Ion
TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H-PYRAZOL-1-YL)PHENYL]ETHYL}CARBAMATE
5
SO4
11
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: FC4 (SOFTWARE)
02: FC5 (SOFTWARE)
03: FC6 (SOFTWARE)
04: FC7 (SOFTWARE)
05: FC8 (SOFTWARE)
06: FC9 (SOFTWARE)
07: GC1 (SOFTWARE)
08: GC2 (SOFTWARE)
09: GC3 (SOFTWARE)
10: GC4 (SOFTWARE)
11: GC5 (SOFTWARE)
12: GC6 (SOFTWARE)
13: GC7 (SOFTWARE)
14: GC8 (SOFTWARE)
15: GC9 (SOFTWARE)
16: HC1 (SOFTWARE)
17: HC2 (SOFTWARE)
18: HC3 (SOFTWARE)
19: HC4 (SOFTWARE)
20: HC5 (SOFTWARE)
21: HC6 (SOFTWARE)
22: HC7 (SOFTWARE)
23: HC8 (SOFTWARE)
24: HC9 (SOFTWARE)
25: IC1 (SOFTWARE)
26: IC2 (SOFTWARE)
27: IC3 (SOFTWARE)
28: IC4 (SOFTWARE)
29: IC5 (SOFTWARE)
30: IC6 (SOFTWARE)
31: IC7 (SOFTWARE)
32: IC8 (SOFTWARE)
33: IC9 (SOFTWARE)
34: JC1 (SOFTWARE)
35: JC2 (SOFTWARE)
36: JC3 (SOFTWARE)
37: JC4 (SOFTWARE)
38: JC5 (SOFTWARE)
39: JC6 (SOFTWARE)
40: JC7 (SOFTWARE)
41: JC8 (SOFTWARE)
42: JC9 (SOFTWARE)
43: KC1 (SOFTWARE)
44: KC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
FC4
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:1003 , R5T G:1006 , HOH G:1140
BINDING SITE FOR RESIDUE ZN G 1001
02
FC5
SOFTWARE
ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , R5T G:1006
BINDING SITE FOR RESIDUE CO3 G 1002
03
FC6
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:1001 , R5T G:1006
BINDING SITE FOR RESIDUE ZN G 1003
04
FC7
SOFTWARE
GLY G:390 , SER G:391 , MET G:392 , HOH G:1216
BINDING SITE FOR RESIDUE SO4 G 1004
05
FC8
SOFTWARE
PHE G:156 , ASN G:161 , LYS G:164 , TYR J:176 , PHE J:178 , SER J:184
BINDING SITE FOR RESIDUE SO4 G 1005
06
FC9
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:392 , ASP G:459 , GLU G:461 , LEU G:487 , GLY G:489 , ALA G:577 , ZN G:1001 , CO3 G:1002 , ZN G:1003 , HOH G:1140 , HOH G:1141 , HOH G:1244
BINDING SITE FOR RESIDUE R5T G 1006
07
GC1
SOFTWARE
ASN A:122 , TYR A:270 , GLY G:120 , ASN G:122 , TYR G:270
BINDING SITE FOR RESIDUE 1PE G 1007
08
GC2
SOFTWARE
TYR G:103 , HIS G:108 , LEU G:321 , TYR G:411 , HOH G:1210
BINDING SITE FOR RESIDUE 1PE G 1008
09
GC3
SOFTWARE
LYS A:111 , GLY G:126 , SER G:220
BINDING SITE FOR RESIDUE DMS G 1009
10
GC4
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:1003 , R5T H:1005
BINDING SITE FOR RESIDUE ZN H 1001
11
GC5
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , R5T H:1005
BINDING SITE FOR RESIDUE CO3 H 1002
12
GC6
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:1001 , R5T H:1005
BINDING SITE FOR RESIDUE ZN H 1003
13
GC7
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
BINDING SITE FOR RESIDUE SO4 H 1004
14
GC8
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASP H:459 , GLU H:461 , ARG H:463 , LEU H:487 , GLY H:489 , ALA H:577 , ZN H:1001 , CO3 H:1002 , ZN H:1003
BINDING SITE FOR RESIDUE R5T H 1005
15
GC9
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:1003 , R5T I:1004
BINDING SITE FOR RESIDUE ZN I 1001
16
HC1
SOFTWARE
LYS I:374 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , R5T I:1004
BINDING SITE FOR RESIDUE CO3 I 1002
17
HC2
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:1001 , R5T I:1004
BINDING SITE FOR RESIDUE ZN I 1003
18
HC3
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , MET I:392 , ASP I:459 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , GLY I:489 , LEU I:492 , SER I:554 , ALA I:577 , ZN I:1001 , CO3 I:1002 , ZN I:1003 , HOH I:1133
BINDING SITE FOR RESIDUE R5T I 1004
19
HC4
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320 , 1PE I:1006 , HOH I:1244 , HOH I:1260
BINDING SITE FOR RESIDUE 1PE I 1005
20
HC5
SOFTWARE
TYR I:103 , ASN I:104 , PHE I:289 , TYR I:411 , 1PE I:1005 , HOH I:1178
BINDING SITE FOR RESIDUE 1PE I 1006
21
HC6
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:1003 , R5T J:1004 , HOH J:1146
BINDING SITE FOR RESIDUE ZN J 1001
22
HC7
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , R5T J:1004
BINDING SITE FOR RESIDUE CO3 J 1002
23
HC8
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:1001 , R5T J:1004
BINDING SITE FOR RESIDUE ZN J 1003
24
HC9
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , MET J:392 , ASP J:459 , GLU J:461 , ARG J:463 , LEU J:487 , GLY J:489 , ALA J:577 , ZN J:1001 , CO3 J:1002 , ZN J:1003 , HOH J:1146 , HOH J:1165
BINDING SITE FOR RESIDUE R5T J 1004
25
IC1
SOFTWARE
TYR J:103 , HIS J:108 , LYS J:320 , TYR J:411
BINDING SITE FOR RESIDUE 1PE J 1005
26
IC2
SOFTWARE
GLU J:316 , LYS J:320
BINDING SITE FOR RESIDUE 1PE J 1006
27
IC3
SOFTWARE
ASN J:545 , SER J:549 , ARG K:586
BINDING SITE FOR RESIDUE SO4 J 1007
28
IC4
SOFTWARE
LYS I:552 , LEU J:492 , PHE J:583
BINDING SITE FOR RESIDUE SO4 J 1008
29
IC5
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:1003 , R5T K:1007
BINDING SITE FOR RESIDUE ZN K 1001
30
IC6
SOFTWARE
LYS K:374 , ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , R5T K:1007
BINDING SITE FOR RESIDUE CO3 K 1002
31
IC7
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:1001 , R5T K:1007
BINDING SITE FOR RESIDUE ZN K 1003
32
IC8
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
BINDING SITE FOR RESIDUE SO4 K 1004
33
IC9
SOFTWARE
GLY K:390 , SER K:391 , MET K:392
BINDING SITE FOR RESIDUE SO4 K 1005
34
JC1
SOFTWARE
TYR K:103 , ASN K:104
BINDING SITE FOR RESIDUE SO4 K 1006
35
JC2
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , MET K:392 , ASP K:459 , GLU K:461 , ARG K:463 , LEU K:487 , GLY K:489 , SER K:554 , ALA K:577 , ZN K:1001 , CO3 K:1002 , ZN K:1003 , HOH K:1119
BINDING SITE FOR RESIDUE R5T K 1007
36
JC3
SOFTWARE
TYR K:103 , HIS K:108 , PHE K:289 , LYS K:320 , TYR K:411
BINDING SITE FOR RESIDUE 1PE K 1008
37
JC4
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:1003 , R5T L:1006 , HOH L:1116
BINDING SITE FOR RESIDUE ZN L 1001
38
JC5
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , R5T L:1006
BINDING SITE FOR RESIDUE CO3 L 1002
39
JC6
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:1001 , R5T L:1006
BINDING SITE FOR RESIDUE ZN L 1003
40
JC7
SOFTWARE
TYR L:103 , ASN L:104
BINDING SITE FOR RESIDUE SO4 L 1004
41
JC8
SOFTWARE
GLY L:390 , SER L:391 , MET L:392
BINDING SITE FOR RESIDUE SO4 L 1005
42
JC9
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , ASP L:459 , GLU L:461 , LEU L:487 , GLY L:489 , ALA L:577 , ZN L:1001 , CO3 L:1002 , ZN L:1003
BINDING SITE FOR RESIDUE R5T L 1006
43
KC1
SOFTWARE
TYR L:103 , ASN L:104 , HIS L:108 , LYS L:320 , LEU L:321 , TYR L:411
BINDING SITE FOR RESIDUE 1PE L 1007
44
KC2
SOFTWARE
TRP G:525 , TRP G:526 , TRP L:525 , TRP L:526
BINDING SITE FOR RESIDUE SO4 L 1008
[
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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