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4R6O
Biol. Unit 3
Info
Asym.Unit (116 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (58 KB)
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(1)
Title
:
JACALIN-CARBOHYDRATE INTERACTIONS. DISTORTION OF THE LIGAND AS A DETERMINANT OF AFFINITY.
Authors
:
K. V. Abhinav, K. Sharma, C. P. Swaminathan, A. Surolia, M. Vijayan
Date
:
26 Aug 14 (Deposition) - 18 Feb 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: E,F,G,H (1x)
Keywords
:
Galactose Specific Lectin, Beta-Prism I Fold, Post Translational Proteolysis, T-Antigen Binding Protein, Plant Lectins, Galactose, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. V. Abhinav, K. Sharma, C. P. Swaminathan, A. Surolia, M. Vijayan
Jacalin-Carbohydrate Interactions: Distortion Of The Ligand Molecule As A Determinant Of Affinity.
Acta Crystallogr. , Sect. D V. 71 324 2015
(for further references see the
PDB file header
)
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
2c: ALPHA D-GALACTOSE (GLAc)
2d: ALPHA D-GALACTOSE (GLAd)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
3g: ISOPROPYL ALCOHOL (IPAg)
3h: ISOPROPYL ALCOHOL (IPAh)
3i: ISOPROPYL ALCOHOL (IPAi)
3j: ISOPROPYL ALCOHOL (IPAj)
3k: ISOPROPYL ALCOHOL (IPAk)
4a: 4-METHYL-2H-CHROMEN-2-ONE (ZZ1a)
4b: 4-METHYL-2H-CHROMEN-2-ONE (ZZ1b)
4c: 4-METHYL-2H-CHROMEN-2-ONE (ZZ1c)
4d: 4-METHYL-2H-CHROMEN-2-ONE (ZZ1d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
GLA
2
Ligand/Ion
ALPHA D-GALACTOSE
3
IPA
10
Ligand/Ion
ISOPROPYL ALCOHOL
4
ZZ1
2
Ligand/Ion
4-METHYL-2H-CHROMEN-2-ONE
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Sites
(17, 17)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
14: BC9 (SOFTWARE)
15: CC1 (SOFTWARE)
16: CC2 (SOFTWARE)
17: CC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
TYR A:64 , ASN A:110 , GLY A:111 , SER F:4
BINDING SITE FOR RESIDUE IPA A 203
02
AC5
SOFTWARE
GLY C:1 , PHE C:47 , TYR C:78 , GLY C:121 , TYR C:122 , TRP C:123 , ASP C:125 , ZZ1 C:201 , HOH C:354 , TYR G:122 , ZZ1 G:201
BINDING SITE FOR RESIDUE GLA C 202
03
AC6
SOFTWARE
SER E:76 , TYR E:78 , TYR E:122 , TRP E:123 , GLA E:202
BINDING SITE FOR RESIDUE ZZ1 E 201
04
AC7
SOFTWARE
GLY E:1 , TYR E:78 , VAL E:80 , GLY E:121 , TYR E:122 , TRP E:123 , ASP E:125 , ZZ1 E:201 , HOH E:321 , HOH E:346
BINDING SITE FOR RESIDUE GLA E 202
05
AC8
SOFTWARE
ALA A:8 , THR A:10 , ASN A:35 , ALA E:8
BINDING SITE FOR RESIDUE EDO E 203
06
AC9
SOFTWARE
GLU E:67 , SER E:69 , IPA E:206 , HOH E:322 , HOH E:419
BINDING SITE FOR RESIDUE EDO E 204
07
BC1
SOFTWARE
GLN B:3 , SER B:4 , TYR E:64 , ASN E:110 , GLY E:111 , HOH E:310 , HOH E:421
BINDING SITE FOR RESIDUE IPA E 205
08
BC2
SOFTWARE
HOH A:426 , THR E:85 , PRO E:95 , EDO E:204 , HOH E:352
BINDING SITE FOR RESIDUE IPA E 206
09
BC4
SOFTWARE
ASN E:74 , ARG E:82 , SER E:100 , GLY E:101
BINDING SITE FOR RESIDUE IPA E 208
10
BC5
SOFTWARE
PRO F:14 , GLY F:16 , ALA F:17 , LYS F:18 , HOH F:214
BINDING SITE FOR RESIDUE IPA F 101
11
BC6
SOFTWARE
TYR E:130 , GLN F:8 , THR F:9 , ILE F:11 , HOH F:210 , ASN G:110
BINDING SITE FOR RESIDUE IPA F 102
12
BC7
SOFTWARE
GLY C:1 , GLA C:202 , HOH C:423 , TYR G:78 , TYR G:122 , TRP G:123 , GLA G:202 , HOH G:397
BINDING SITE FOR RESIDUE ZZ1 G 201
13
BC8
SOFTWARE
TYR C:78 , VAL C:79 , HOH C:399 , GLY G:1 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , ZZ1 G:201 , IPA G:204 , HOH G:334
BINDING SITE FOR RESIDUE GLA G 202
14
BC9
SOFTWARE
SER D:4 , TYR G:64 , ASN G:110 , GLY G:111 , LEU G:112 , HOH G:408
BINDING SITE FOR RESIDUE IPA G 203
15
CC1
SOFTWARE
GLY G:1 , ASP G:125 , GLA G:202 , HOH G:340 , HOH G:409
BINDING SITE FOR RESIDUE IPA G 204
16
CC2
SOFTWARE
ASP C:5 , GLY C:7 , ASN G:35 , HOH G:426 , HOH G:450
BINDING SITE FOR RESIDUE IPA G 205
17
CC3
SOFTWARE
LYS A:87 , THR A:88 , LYS A:90 , LYS A:91 , THR A:92 , HOH A:435 , HOH G:435
BINDING SITE FOR RESIDUE IPA G 206
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
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