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4R6N
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (110 KB)
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(1)
Title
:
JACALIN-CARBOHYDRATE INTERACTIONS. DISTORTION OF THE LIGAND AS A DETERMINANT OF AFFINITY
Authors
:
K. V. Abhinav, K. Sharma, C. P. Swaminathan, A. Surolia, M. Vijayan
Date
:
26 Aug 14 (Deposition) - 18 Feb 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Galactose Specific Lectin, Beta-Prism I Fold, Post Translational Proteolysis, T-Antigen Binding Protein, Plant Lectins, Galactose, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. V. Abhinav, K. Sharma, C. P. Swaminathan, A. Surolia, M. Vijayan
Jacalin-Carbohydrate Interactions: Distortion Of The Ligand Molecule As A Determinant Of Affinity.
Acta Crystallogr. , Sect. D V. 71 324 2015
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 26)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
2c: ISOPROPYL ALCOHOL (IPAc)
2d: ISOPROPYL ALCOHOL (IPAd)
2e: ISOPROPYL ALCOHOL (IPAe)
2f: ISOPROPYL ALCOHOL (IPAf)
2g: ISOPROPYL ALCOHOL (IPAg)
2h: ISOPROPYL ALCOHOL (IPAh)
2i: ISOPROPYL ALCOHOL (IPAi)
2j: ISOPROPYL ALCOHOL (IPAj)
2k: ISOPROPYL ALCOHOL (IPAk)
2l: ISOPROPYL ALCOHOL (IPAl)
2m: ISOPROPYL ALCOHOL (IPAm)
2n: ISOPROPYL ALCOHOL (IPAn)
2o: ISOPROPYL ALCOHOL (IPAo)
2p: ISOPROPYL ALCOHOL (IPAp)
2q: ISOPROPYL ALCOHOL (IPAq)
2r: ISOPROPYL ALCOHOL (IPAr)
3a: METHYL-BETA-GALACTOSE (MBGa)
3b: METHYL-BETA-GALACTOSE (MBGb)
3c: METHYL-BETA-GALACTOSE (MBGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
IPA
18
Ligand/Ion
ISOPROPYL ALCOHOL
3
MBG
3
Ligand/Ion
METHYL-BETA-GALACTOSE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:1 , TYR A:78 , GLY A:121 , TYR A:122 , TRP A:123 , ASP A:125 , IPA A:204 , HOH A:354 , HOH A:450
BINDING SITE FOR RESIDUE MBG A 201
02
AC2
SOFTWARE
SER A:69 , GLY A:70 , SER A:83 , THR A:85 , PRO A:95 , HOH A:334
BINDING SITE FOR RESIDUE IPA A 202
03
AC3
SOFTWARE
ALA A:8 , PHE A:9 , HOH A:377 , ALA E:8 , THR E:10 , LEU E:34
BINDING SITE FOR RESIDUE IPA A 203
04
AC4
SOFTWARE
GLY A:1 , PHE A:47 , MBG A:201
BINDING SITE FOR RESIDUE IPA A 204
05
AC5
SOFTWARE
LEU A:34 , ASN A:35 , SER A:37 , THR C:49 , PHE E:9 , TYR E:39 , HOH E:340
BINDING SITE FOR RESIDUE IPA A 205
06
AC6
SOFTWARE
TYR A:64 , ASN A:110 , GLY A:111 , HOH A:342 , HOH A:378 , SER F:4
BINDING SITE FOR RESIDUE EDO A 206
07
AC7
SOFTWARE
PHE C:51 , LEU E:34 , PRO E:38 , TYR E:39 , IPA E:202
BINDING SITE FOR RESIDUE IPA C 201
08
AC8
SOFTWARE
GLN B:8 , ASN C:110 , GLY C:111 , LEU C:133 , HOH C:404
BINDING SITE FOR RESIDUE IPA C 202
09
AC9
SOFTWARE
ALA C:8 , THR C:10 , LEU C:34 , ALA G:8 , LEU G:34
BINDING SITE FOR RESIDUE IPA C 203
10
BC1
SOFTWARE
ASN C:74 , GLY C:77 , HOH C:406 , GLY G:1 , LYS G:2 , ALA G:3 , HOH G:420
BINDING SITE FOR RESIDUE IPA C 204
11
BC2
SOFTWARE
LEU C:17 , ASP C:27 , ASN C:43 , LYS C:45 , PRO C:53 , HOH C:321 , VAL E:40 , IPA E:202
BINDING SITE FOR RESIDUE EDO C 205
12
BC3
SOFTWARE
ASN A:110 , HOH A:432 , TYR C:130 , GLN D:8 , THR D:9 , ILE D:11 , IPA D:102 , HOH D:207
BINDING SITE FOR RESIDUE IPA D 101
13
BC4
SOFTWARE
SER D:7 , THR D:9 , IPA D:101 , HOH D:205 , HOH D:207 , ASN G:35
BINDING SITE FOR RESIDUE IPA D 102
14
BC5
SOFTWARE
HOH A:333 , THR C:72 , PHE C:104 , TRP D:15 , GLY D:16 , ALA D:17
BINDING SITE FOR RESIDUE EDO D 103
15
BC6
SOFTWARE
GLY E:1 , TYR E:78 , GLY E:121 , TYR E:122 , TRP E:123 , ASP E:125 , HOH E:361
BINDING SITE FOR RESIDUE MBG E 201
16
BC7
SOFTWARE
SER C:18 , ASP C:27 , LYS C:45 , PHE C:51 , PRO C:53 , IPA C:201 , EDO C:205 , HOH C:405 , VAL E:40
BINDING SITE FOR RESIDUE IPA E 202
17
BC8
SOFTWARE
LYS A:21 , HOH A:364 , GLY E:94 , TYR E:96 , HOH E:341
BINDING SITE FOR RESIDUE IPA E 203
18
BC9
SOFTWARE
THR E:52
BINDING SITE FOR RESIDUE IPA E 204
19
CC1
SOFTWARE
VAL C:40 , ASN E:16 , ASP E:27 , ASN E:43 , EDO E:207 , HOH E:401
BINDING SITE FOR RESIDUE IPA E 205
20
CC2
SOFTWARE
GLU E:109 , HOH E:324 , LYS G:117
BINDING SITE FOR RESIDUE EDO E 206
21
CC3
SOFTWARE
TYR C:39 , VAL C:40 , ASP E:27 , IPA E:205
BINDING SITE FOR RESIDUE EDO E 207
22
CC4
SOFTWARE
TYR C:78 , VAL C:79 , HOH C:316 , GLY G:1 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , HOH G:331
BINDING SITE FOR RESIDUE MBG G 201
23
CC5
SOFTWARE
GLY C:1 , TYR C:78 , GLY C:121 , TYR C:122 , TRP C:123 , ASP C:125 , TYR G:122 , HOH G:341
BINDING SITE FOR RESIDUE IPA G 202
24
CC6
SOFTWARE
GLY G:73 , ASN G:74 , ARG G:82 , SER G:100
BINDING SITE FOR RESIDUE IPA G 203
25
CC7
SOFTWARE
ASN E:110 , THR H:9
BINDING SITE FOR RESIDUE IPA H 101
26
CC8
SOFTWARE
VAL G:79 , HOH G:351 , LYS H:18
BINDING SITE FOR RESIDUE IPA H 102
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Atom Selection
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Chain H
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Show PDB file:
Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (110 KB)
Header - Biol.Unit 3
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