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4R5H
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (126 KB)
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Title
:
CRYSTAL STRUCTURE OF SP-ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE WITH NICOTINAMIDE-ADENINE-DINUCLEOTIDE-PHOSPHATE AND 3-CARBOXY-PROPENYL-PHTHALIC ACID
Authors
:
A. G. Pavlovsky, B. Thangavelu, P. Bhansali, R. E. Viola
Date
:
21 Aug 14 (Deposition) - 10 Dec 14 (Release) - 31 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Oxidoreductase, Nadp
(Keyword Search:
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Reference
:
A. G. Pavlovsky, B. Thangavelu, P. Bhansali, R. E. Viola
A Cautionary Tale Of Structure-Guided Inhibitor Development Against An Essential Enzyme In The Aspartate-Biosynthetic Pathway.
Acta Crystallogr. , Sect. D V. 70 3244 2014
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: 3-[(1E)-3-CARBOXYPROP-1-EN-1-YL]BE... (3JNa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
3JN
1
Ligand/Ion
3-[(1E)-3-CARBOXYPROP-1-EN-1-YL]BENZENE-1,2-DICARBOXYLIC ACID
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
NA
2
Ligand/Ion
SODIUM ION
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:24 , SER A:25 , TRP A:332 , GLU A:339 , HOH A:503 , THR B:26 , EDO B:401
BINDING SITE FOR RESIDUE EDO A 401
02
AC2
SOFTWARE
GLN A:17 , SER A:250 , GLY A:298 , ASP A:324 , LEU A:326 , HOH A:577
BINDING SITE FOR RESIDUE EDO A 402
03
AC3
SOFTWARE
LEU A:311 , ASP A:312 , HOH A:558 , HOH A:749 , LYS B:229
BINDING SITE FOR RESIDUE EDO A 403
04
AC4
SOFTWARE
GLU A:282 , PRO A:291 , GLN A:292 , ASN A:295 , ALA A:296 , PHE A:303 , HOH A:658
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
ILE A:273 , ALA A:274 , PHE A:276 , ALA A:279 , GLU B:343 , HOH B:605
BINDING SITE FOR RESIDUE NA A 405
06
AC6
SOFTWARE
GLU A:343 , HOH A:507 , ILE B:273 , ALA B:274 , PHE B:276 , ALA B:279
BINDING SITE FOR RESIDUE NA A 406
07
AC7
SOFTWARE
SER A:74 , THR A:95 , SER A:96 , ARG A:99 , ASN A:127 , CYS A:128 , GLN A:155 , GLY A:159 , ILE A:209 , LYS A:223 , ARG A:245 , HIS A:252 , NAP A:408
BINDING SITE FOR RESIDUE 3JN A 407
08
AC8
SOFTWARE
GLY A:9 , THR A:11 , GLY A:12 , ALA A:13 , VAL A:14 , ALA A:36 , SER A:37 , ARG A:39 , SER A:40 , THR A:57 , SER A:71 , ALA A:72 , GLY A:73 , THR A:76 , ASN A:94 , THR A:95 , PRO A:126 , ASN A:127 , CYS A:128 , GLY A:161 , MET A:162 , GLY A:329 , 3JN A:407 , HOH A:538 , HOH A:572 , HOH A:573 , HOH A:588 , HOH A:589 , HOH A:614 , HOH A:630 , HOH A:636 , HOH A:696 , HOH A:737 , HOH A:770
BINDING SITE FOR RESIDUE NAP A 408
09
AC9
SOFTWARE
THR A:26 , EDO A:401 , GLU B:24 , SER B:25 , TRP B:332 , GLU B:339 , HOH B:546
BINDING SITE FOR RESIDUE EDO B 401
10
BC1
SOFTWARE
SER B:250 , GLY B:298 , ASP B:324 , LEU B:326 , HOH B:555 , HOH B:639
BINDING SITE FOR RESIDUE EDO B 402
11
BC2
SOFTWARE
GLU B:282 , PRO B:291 , GLN B:292 , ASN B:295 , ALA B:296 , PHE B:303
BINDING SITE FOR RESIDUE EDO B 403
12
BC3
SOFTWARE
LYS A:229 , LEU B:311 , ASP B:312 , HOH B:533
BINDING SITE FOR RESIDUE EDO B 404
13
BC4
SOFTWARE
GLY B:9 , THR B:11 , GLY B:12 , ALA B:13 , VAL B:14 , ALA B:36 , SER B:37 , ARG B:39 , SER B:40 , THR B:57 , SER B:71 , ALA B:72 , GLY B:73 , THR B:76 , ASN B:94 , PRO B:126 , ASN B:127 , CYS B:128 , GLY B:161 , MET B:162 , GLY B:163 , GLY B:329 , HOH B:584 , HOH B:587 , HOH B:602 , HOH B:610 , HOH B:721
BINDING SITE FOR RESIDUE NAP B 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (133 KB)
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