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4R4F
Asym. Unit
Info
Asym.Unit (287 KB)
Biol.Unit 1 (279 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NON-NEUTRALIZING, A32-LIKE ANTIBODY 2.2C IN COMPLEX WITH HIV-1 YU2 GP120
Authors
:
P. Acharya, P. D. Kwong
Date
:
19 Aug 14 (Deposition) - 17 Sep 14 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.51
Chains
:
Asym. Unit : A,H,L,R
Biol. Unit 1: A,H,L,R (1x)
Keywords
:
Hiv-1 Attachment Protein, Membrane, Viral Protein-Immune System- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Acharya, W. D. Tolbert, N. Gohain, X. Wu, L. Yu, T. Liu, W. Huang, C. C. Huang, Y. D. Kwon, R. K. Louder, T. S. Luongo, J. S. Mclellan, M. Pancera, Y. Yang, B. Zhang, R. Flinko, J. S. Foulke, M. M. Sajadi, R. Kamin-Lewis, J. E. Robinson, L. Martin, P. D. Kwong, Y. Guan, A. L. Devico, G. K. Lewis, M. Pazgier
Structural Definition Of An Antibody-Dependent Cellular Cytotoxicity Response Implicated In Reduced Risk For Hiv-1 Infection.
J. Virol. V. 88 12895 2014
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Hetero Components
(8, 18)
Info
All Hetero Components
1a: (R,R)-2,3-BUTANEDIOL (BU3a)
1b: (R,R)-2,3-BUTANEDIOL (BU3b)
1c: (R,R)-2,3-BUTANEDIOL (BU3c)
2a: D-PROLINE (DPRa)
3a: BETA-MERCAPTOPROPIONIC ACID (MPTa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: AMINO GROUP (NH2a)
6a: O-ACETYLSERINE (OASa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
8a: O-(CYCLOHEXYLMETHYL)-L-TYROSINE (U2Xa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BU3
3
Ligand/Ion
(R,R)-2,3-BUTANEDIOL
2
DPR
1
Mod. Amino Acid
D-PROLINE
3
MPT
1
Mod. Amino Acid
BETA-MERCAPTOPROPIONIC ACID
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NH2
1
Mod. Amino Acid
AMINO GROUP
6
OAS
1
Mod. Amino Acid
O-ACETYLSERINE
7
SO4
2
Ligand/Ion
SULFATE ION
8
U2X
1
Mod. Amino Acid
O-(CYCLOHEXYLMETHYL)-L-TYROSINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS R:19 , ALA R:20 , THR R:22 , U2X R:23
BINDING SITE FOR RESIDUE DPR R 21
02
AC2
SOFTWARE
THR A:278 , ASN A:280 , ARG A:456 , GLY A:458 , GLY A:459
BINDING SITE FOR RESIDUE BU3 A 508
03
AC3
SOFTWARE
PRO L:59 , SER L:60
BINDING SITE FOR RESIDUE BU3 L 301
04
AC4
SOFTWARE
LYS H:43 , ARG H:44
BINDING SITE FOR RESIDUE SO4 A 510
05
AC5
SOFTWARE
ARG H:94
BINDING SITE FOR RESIDUE SO4 H 301
06
AC6
SOFTWARE
ASN A:234 , THR A:236 , SER A:274
BINDING SITE FOR MONO-SACCHARIDE NAG A 503 BOUND TO ASN A 234
07
AC7
SOFTWARE
GLU A:211 , PRO A:212 , VAL A:254 , LEU A:261 , ASN A:262 , CYS A:445 , SER A:446 , SER A:447
BINDING SITE FOR MONO-SACCHARIDE NAG A 506 BOUND TO ASN A 262
08
AC8
SOFTWARE
ASN A:276 , THR A:278 , ASN A:279
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 276
09
AC9
SOFTWARE
GLU A:268 , GLU A:269 , ILE A:270 , ASN A:289 , GLN A:344
BINDING SITE FOR MONO-SACCHARIDE NAG A 507 BOUND TO ASN A 289
10
BC1
SOFTWARE
ASN A:295 , ASN A:413
BINDING SITE FOR MONO-SACCHARIDE NAG A 505 BOUND TO ASN A 295
11
BC2
SOFTWARE
ASN A:386 , THR A:388
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 386
12
BC3
SOFTWARE
ASN A:448
BINDING SITE FOR MONO-SACCHARIDE NAG A 504 BOUND TO ASN A 448
13
BC4
SOFTWARE
SER H:19 , SER H:70 , SER H:79 , ASN H:81
BINDING SITE FOR MONO-SACCHARIDE NAG H 302 BOUND TO ASN H 81
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (287 KB)
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