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4R4B
Biol. Unit 1
Info
Asym.Unit (578 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (150 KB)
Biol.Unit 3 (146 KB)
Biol.Unit 4 (146 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ANTI-HIV-1 ANTIBODY 2.2C
Authors
:
J. S. Mclellan, P. Acharya, C. -C. Huang, J. Robinson, P. D. Kwong
Date
:
19 Aug 14 (Deposition) - 10 Sep 14 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Keywords
:
Igg, Fab, Hiv, Immunoglobulin Domain, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Acharya, W. D. Tolbert, N. Gohain, X. Wu, L. Yu, T. Liu, W. Huang, C. C. Huang, Y. D. Kwon, R. K. Louder, T. S. Luongo, J. S. Mclellan, M. Pancera, Y. Yang, B. Zhang, R. Flinko, J. S. Foulke, M. M. Sajadi, R. Kamin-Lewis, J. E. Robinson, L. Martin, P. D. Kwong, Y. Guan, A. L. Devico, G. K. Lewis, M. Pazgier
Structural Definition Of An Antibody-Dependent Cellular Cytotoxicity Response Implicated In Reduced Risk For Hiv-1 Infection.
J. Virol. V. 88 12895 2014
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
11
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC6 (SOFTWARE)
14: BC7 (SOFTWARE)
15: BC8 (SOFTWARE)
16: CC3 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC7 (SOFTWARE)
19: DC1 (SOFTWARE)
20: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP L:1 , ILE L:2 , HIS L:90 , LEU L:94 , HOH L:503 , HOH L:606
BINDING SITE FOR RESIDUE SO4 L 301
02
AC2
SOFTWARE
LYS H:214 , SER L:121 , ASP L:122 , GLU L:123 , HOH L:455 , HOH L:510
BINDING SITE FOR RESIDUE SO4 L 302
03
AC3
SOFTWARE
SER A:76 , HOH A:506 , ARG L:108 , HOH L:545 , HOH L:582
BINDING SITE FOR RESIDUE SO4 L 303
04
AC4
SOFTWARE
ARG L:18 , THR L:20 , HOH L:560
BINDING SITE FOR RESIDUE SO4 L 304
05
AC5
SOFTWARE
PRO L:59 , SER L:60 , HOH L:575 , HOH L:576 , HOH L:613 , HOH L:614
BINDING SITE FOR RESIDUE SO4 L 305
06
AC6
SOFTWARE
GLY L:28 , ILE L:29 , SER L:30 , GLY L:68 , HOH L:581 , HOH L:586 , HOH L:595
BINDING SITE FOR RESIDUE SO4 L 306
07
AC7
SOFTWARE
THR H:17 , SER H:19 , ASN H:81
BINDING SITE FOR RESIDUE NAG H 301
08
AC8
SOFTWARE
LYS D:206 , HOH D:402 , TYR H:33 , ARG H:95 , ASN H:97 , TRP H:98 , HOH H:505
BINDING SITE FOR RESIDUE SO4 H 302
09
AC9
SOFTWARE
LYS H:43 , ARG H:44 , HOH H:551 , HOH H:561
BINDING SITE FOR RESIDUE SO4 H 303
10
BC1
SOFTWARE
GLN D:5 , GLY H:31 , LYS H:52 , ASN H:97 , HOH H:455 , HOH H:480 , HOH H:525
BINDING SITE FOR RESIDUE SO4 H 304
11
BC2
SOFTWARE
ARG H:94 , HOH H:436
BINDING SITE FOR RESIDUE SO4 H 305
12
BC3
SOFTWARE
SO4 B:308 , SER D:28 , SER F:28 , SER H:74 , LYS H:75 , HOH H:482
BINDING SITE FOR RESIDUE SO4 H 306
13
BC6
SOFTWARE
SER A:182 , HOH A:411 , SER H:172 , GLY L:157
BINDING SITE FOR RESIDUE SO4 A 303
14
BC7
SOFTWARE
THR A:109 , VAL A:110 , HOH A:440 , HOH A:532 , HOH L:475 , HOH L:558
BINDING SITE FOR RESIDUE SO4 A 304
15
BC8
SOFTWARE
VAL A:11 , SER A:12 , HOH A:510 , THR L:109 , VAL L:110 , HOH L:437
BINDING SITE FOR RESIDUE SO4 A 305
16
CC3
SOFTWARE
SER B:172 , HOH B:406 , SER L:182
BINDING SITE FOR RESIDUE SO4 B 304
17
CC5
SOFTWARE
PRO B:14 , SER B:113 , HOH B:502 , LYS L:183 , GLU L:187
BINDING SITE FOR RESIDUE SO4 B 306
18
CC7
SOFTWARE
SER B:74 , LYS B:75 , SER D:28 , SER F:28 , SO4 H:306
BINDING SITE FOR RESIDUE SO4 B 308
19
DC1
SOFTWARE
GLY C:28 , ILE C:29 , SER C:30 , GLY C:68 , HOH H:467
BINDING SITE FOR RESIDUE SO4 C 302
20
DC8
SOFTWARE
SER F:30 , GLY F:31 , LYS F:52 , HIS F:53 , ASN F:54 , HOH F:409 , HOH F:437 , TYR H:25 , GLN H:77
BINDING SITE FOR RESIDUE SO4 F 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain H
Chain L
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (578 KB)
Header - Asym.Unit
Biol.Unit 1 (150 KB)
Header - Biol.Unit 1
Biol.Unit 2 (150 KB)
Header - Biol.Unit 2
Biol.Unit 3 (146 KB)
Header - Biol.Unit 3
Biol.Unit 4 (146 KB)
Header - Biol.Unit 4
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