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4R34
Asym. Unit
Info
Asym.Unit (285 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (279 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE TRYPTOPHAN LYASE NOSL WITH TRYPTOPHAN, 5'-DEOXYADENOSINE AND METHIONINE BOUND
Authors
:
Y. Nicolet, L. Zeppieri, P. Amara, J. -C. Fontecilla-Camps
Date
:
14 Aug 14 (Deposition) - 17 Sep 14 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Radical Sam Enzyme/Beta-Alpha Barrel, Tryptophan Lyase, Fe4S4 Cluster And S-Adenosyl-L-Methionine, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nicolet, L. Zeppieri, P. Amara, J. C. Fontecilla-Camps
Crystal Structure Of Tryptophan Lyase (Nosl): Evidence For Radical Formation At The Amino Group Of Tryptophan.
Angew. Chem. Int. Ed. Engl. V. 53 11840 2014
[
close entry info
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Hetero Components
(9, 24)
Info
All Hetero Components
1a: 5'-DEOXYADENOSINE (5ADa)
1b: 5'-DEOXYADENOSINE (5ADb)
2a: BROMIDE ION (BRa)
2b: BROMIDE ION (BRb)
2c: BROMIDE ION (BRc)
2d: BROMIDE ION (BRd)
2e: BROMIDE ION (BRe)
2f: BROMIDE ION (BRf)
2g: BROMIDE ION (BRg)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: METHIONINE (METa)
4b: METHIONINE (METb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
6b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
7a: IRON/SULFUR CLUSTER (SF4a)
7b: IRON/SULFUR CLUSTER (SF4b)
8a: TRYPTOPHAN (TRPa)
8b: TRYPTOPHAN (TRPb)
9a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5AD
2
Ligand/Ion
5'-DEOXYADENOSINE
2
BR
7
Ligand/Ion
BROMIDE ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
MET
2
Mod. Amino Acid
METHIONINE
5
NA
2
Ligand/Ion
SODIUM ION
6
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
7
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
8
TRP
2
Mod. Amino Acid
TRYPTOPHAN
9
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:141 , GLY A:142 , GLU A:143 , ASN A:175 , GLY A:177 , LYS A:224 , ARG A:230 , GLN A:363 , 5AD A:502 , SAH A:503 , SF4 A:504 , HOH A:642
BINDING SITE FOR RESIDUE MET A 501
02
AC2
SOFTWARE
MET A:101 , PHE A:202 , GLU A:204 , ARG A:286 , ALA A:288 , ARG A:323 , GLN A:363 , PHE A:364 , MET A:501 , SAH A:503 , TRP A:505 , HOH A:643
BINDING SITE FOR RESIDUE 5AD A 502
03
AC3
SOFTWARE
TYR A:90 , MET A:101 , THR A:141 , GLY A:142 , ASN A:175 , GLY A:177 , PHE A:202 , GLU A:204 , LYS A:224 , ARG A:230 , ARG A:286 , ALA A:288 , ARG A:323 , GLN A:363 , PHE A:364 , MET A:501 , 5AD A:502 , SF4 A:504 , HOH A:642 , HOH A:643
BINDING SITE FOR RESIDUE SAH A 503
04
AC4
SOFTWARE
CYS A:95 , CYS A:99 , CYS A:102 , MET A:104 , ARG A:105 , LYS A:224 , MET A:501 , SAH A:503
BINDING SITE FOR RESIDUE SF4 A 504
05
AC5
SOFTWARE
PRO A:88 , TYR A:90 , PHE A:202 , THR A:321 , THR A:322 , ARG A:323 , SER A:340 , GLY A:342 , 5AD A:502 , HOH A:610 , HOH A:612 , HOH A:649
BINDING SITE FOR RESIDUE TRP A 505
06
AC6
SOFTWARE
HIS A:84 , ARG A:171 , TYR A:173 , THR A:198 , ASP A:279 , HOH A:625 , HOH A:750
BINDING SITE FOR RESIDUE GOL A 506
07
AC7
SOFTWARE
ARG A:286 , LYS A:290
BINDING SITE FOR RESIDUE BR A 507
08
AC8
SOFTWARE
ARG A:292 , HIS A:388 , HOH A:699
BINDING SITE FOR RESIDUE BR A 508
09
AC9
SOFTWARE
ARG A:82 , HOH A:627
BINDING SITE FOR RESIDUE BR A 509
10
BC1
SOFTWARE
GLU A:380 , VAL A:386 , PHE A:389 , HOH A:629 , HOH A:635
BINDING SITE FOR RESIDUE NA A 510
11
BC2
SOFTWARE
THR B:141 , GLY B:142 , GLU B:143 , ASN B:175 , GLY B:177 , LYS B:224 , ARG B:230 , GLN B:363 , 5AD B:502 , SAH B:503 , SF4 B:504 , HOH B:616
BINDING SITE FOR RESIDUE MET B 501
12
BC3
SOFTWARE
MET B:101 , PHE B:202 , GLU B:204 , LEU B:250 , ARG B:284 , MET B:285 , ARG B:286 , ALA B:288 , ARG B:323 , GLN B:363 , PHE B:364 , MET B:501 , SAH B:503 , TRP B:505 , HOH B:610
BINDING SITE FOR RESIDUE 5AD B 502
13
BC4
SOFTWARE
MET B:101 , THR B:141 , GLY B:142 , GLU B:143 , ASN B:175 , PHE B:202 , GLU B:204 , LYS B:224 , ARG B:230 , ARG B:284 , MET B:285 , ARG B:286 , ALA B:288 , ARG B:323 , GLN B:363 , PHE B:364 , MET B:501 , 5AD B:502 , SF4 B:504 , HOH B:610 , HOH B:616
BINDING SITE FOR RESIDUE SAH B 503
14
BC5
SOFTWARE
CYS B:95 , CYS B:99 , CYS B:102 , MET B:104 , ARG B:105 , LYS B:224 , MET B:501 , SAH B:503
BINDING SITE FOR RESIDUE SF4 B 504
15
BC6
SOFTWARE
PRO B:88 , TYR B:90 , PHE B:202 , THR B:321 , THR B:322 , ARG B:323 , SER B:340 , GLY B:342 , PHE B:364 , 5AD B:502 , HOH B:606 , HOH B:611 , HOH B:633
BINDING SITE FOR RESIDUE TRP B 505
16
BC7
SOFTWARE
HIS B:84 , ARG B:171 , TYR B:173 , THR B:198 , ASP B:279 , ARG B:317 , HOH B:646 , HOH B:798 , HOH B:826
BINDING SITE FOR RESIDUE GOL B 506
17
BC8
SOFTWARE
HIS B:130 , HIS B:131 , ARG B:373 , HOH B:684 , HOH B:773 , HOH B:992
BINDING SITE FOR RESIDUE GOL B 507
18
BC9
SOFTWARE
THR B:210 , ARG B:213 , PHE B:214 , LEU B:253 , HIS B:254 , ASP B:255 , ARG B:292 , HOH B:810 , HOH B:898
BINDING SITE FOR RESIDUE GOL B 508
19
CC1
SOFTWARE
ARG B:82 , HOH B:697
BINDING SITE FOR RESIDUE BR B 509
20
CC2
SOFTWARE
ARG B:292 , HIS B:388 , HOH B:764 , HOH B:925
BINDING SITE FOR RESIDUE BR B 510
21
CC3
SOFTWARE
LEU B:167 , ZN B:513
BINDING SITE FOR RESIDUE BR B 511
22
CC4
SOFTWARE
GLU B:380 , VAL B:386 , PHE B:389 , HOH B:654
BINDING SITE FOR RESIDUE NA B 512
23
CC5
SOFTWARE
GLU B:126 , HIS B:130 , BR B:511 , HOH B:931
BINDING SITE FOR RESIDUE ZN B 513
24
CC6
SOFTWARE
ARG B:286 , PRO B:287 , LYS B:290 , HOH B:829
BINDING SITE FOR RESIDUE BR B 514
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (285 KB)
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