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4QYQ
Biol. Unit 3
Info
Asym.Unit (420 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (108 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH AN ANTITHYROID AGENT PROPYLTHIOURACIL AT 2.5 A RESOLUTION
Authors
:
R. P. Singh, A. Singh, G. S. Kushwaha, A. K. Singh, M. Sinha, T. K. Tyagi, P S. Sharma, T. P. Singh
Date
:
25 Jul 14 (Deposition) - 20 Aug 14 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Lactoperoxidase, Oxidoreductase, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, G. S. Kushwaha, A. K. Singh, P. Kaur, S. Sharma, T. P. Singh
Mode Of Binding Of The Antithyroid Drug Propylthiouracil To Mammalian Haem Peroxidases
Acta Crystallogr. , Sect. F V. 71 304 2015
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJa)
1b: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJb)
1c: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJc)
1d: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
5e: NITRATE ION (NO3e)
5f: NITRATE ION (NO3f)
5g: NITRATE ION (NO3g)
5h: NITRATE ION (NO3h)
5i: NITRATE ION (NO3i)
5j: NITRATE ION (NO3j)
5k: NITRATE ION (NO3k)
5l: NITRATE ION (NO3l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CJ
1
Ligand/Ion
6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(11, 11)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: DC3 (SOFTWARE)
08: DC4 (SOFTWARE)
09: DC5 (SOFTWARE)
10: DC6 (SOFTWARE)
11: DC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
MET C:101 , GLY C:104 , GLN C:105 , ASP C:108 , ASP C:112 , PHE C:113 , ALA C:114 , GLU C:258 , THR C:344 , PHE C:347 , ARG C:348 , GLY C:350 , HIS C:351 , VAL C:354 , LEU C:433 , ILE C:436 , ARG C:440 , 3CJ C:607
BINDING SITE FOR RESIDUE HEM C 605
02
BC5
SOFTWARE
ASP C:110 , THR C:184 , PHE C:186 , ASP C:188 , SER C:190
BINDING SITE FOR RESIDUE CA C 606
03
BC6
SOFTWARE
GLN C:105 , HIS C:109 , ARG C:255 , GLU C:258 , HEM C:605
BINDING SITE FOR RESIDUE 3CJ C 607
04
BC7
SOFTWARE
PHE C:309 , ARG C:310 , TRP C:529 , TRP C:530 , GLU C:531
BINDING SITE FOR RESIDUE NO3 C 608
05
BC8
SOFTWARE
LEU C:92 , LYS C:402 , ASN C:403
BINDING SITE FOR RESIDUE NO3 C 609
06
BC9
SOFTWARE
ALA C:44 , ARG C:45 , TRP C:46 , LEU C:47 , ASN C:341 , VAL C:342 , TRP C:452
BINDING SITE FOR RESIDUE NO3 C 610
07
DC3
SOFTWARE
ASN B:241 , ALA B:244 , TRP B:384 , HOH B:820 , PHE C:70 , LYS C:485
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 241 RESIDUES 603 TO 604
08
DC4
SOFTWARE
ASN C:95 , ARG C:96 , ILE C:315 , GLN C:568 , GLY D:5 , GLY D:7 , ALA D:8 , CYS D:167
BINDING SITE FOR MONO-SACCHARIDE NAG C 601 BOUND TO ASN C 95
09
DC5
SOFTWARE
ASN C:205 , LEU C:210 , ALA C:214 , VAL C:215 , GLN C:217 , HOH C:787 , HOH C:847
BINDING SITE FOR MONO-SACCHARIDE NAG C 604 BOUND TO ASN C 205
10
DC6
SOFTWARE
PHE B:70 , LYS B:485 , ASN C:241 , THR C:243 , ALA C:244 , TRP C:384 , HOH C:768 , HOH C:778 , HOH C:809 , HOH C:842
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 241 RESIDUES 602 TO 603
11
DC7
SOFTWARE
CYS C:6 , GLY C:7 , ASN D:95 , ILE D:315 , HOH D:808 , HOH D:848 , HOH D:864
BINDING SITE FOR MONO-SACCHARIDE NAG D 601 BOUND TO ASN D 95
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (420 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (108 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
Biol.Unit 4 (109 KB)
Header - Biol.Unit 4
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