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4QYQ
Biol. Unit 2
Info
Asym.Unit (420 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (108 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH AN ANTITHYROID AGENT PROPYLTHIOURACIL AT 2.5 A RESOLUTION
Authors
:
R. P. Singh, A. Singh, G. S. Kushwaha, A. K. Singh, M. Sinha, T. K. Tyagi, P S. Sharma, T. P. Singh
Date
:
25 Jul 14 (Deposition) - 20 Aug 14 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Lactoperoxidase, Oxidoreductase, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, G. S. Kushwaha, A. K. Singh, P. Kaur, S. Sharma, T. P. Singh
Mode Of Binding Of The Antithyroid Drug Propylthiouracil To Mammalian Haem Peroxidases
Acta Crystallogr. , Sect. F V. 71 304 2015
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJa)
1b: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJb)
1c: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJc)
1d: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
5e: NITRATE ION (NO3e)
5f: NITRATE ION (NO3f)
5g: NITRATE ION (NO3g)
5h: NITRATE ION (NO3h)
5i: NITRATE ION (NO3i)
5j: NITRATE ION (NO3j)
5k: NITRATE ION (NO3k)
5l: NITRATE ION (NO3l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3CJ
1
Ligand/Ion
6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(11, 11)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: DC1 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC6 (SOFTWARE)
11: DC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , GLU B:258 , GLN B:259 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , LEU B:433 , ILE B:436 , ARG B:440 , 3CJ B:607
BINDING SITE FOR RESIDUE HEM B 605
02
AC8
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
BINDING SITE FOR RESIDUE CA B 606
03
AC9
SOFTWARE
GLN B:105 , HIS B:109 , PHE B:113 , ALA B:114 , ARG B:255 , HEM B:605
BINDING SITE FOR RESIDUE 3CJ B 607
04
BC1
SOFTWARE
ARG B:45 , TRP B:46 , LEU B:47 , ASN B:341 , VAL B:342 , MET B:446 , PRO B:447 , TRP B:452
BINDING SITE FOR RESIDUE NO3 B 608
05
BC2
SOFTWARE
LEU B:92 , LYS B:402 , ASN B:403
BINDING SITE FOR RESIDUE NO3 B 609
06
BC3
SOFTWARE
GLN B:305 , ILE B:306 , PHE B:309 , ARG B:310
BINDING SITE FOR RESIDUE NO3 B 610
07
DC1
SOFTWARE
ASN B:95 , GLN B:568 , HOH B:809
BINDING SITE FOR MONO-SACCHARIDE NAG B 601 BOUND TO ASN B 95
08
DC2
SOFTWARE
ASN B:205 , SER B:208 , ALA B:214 , VAL B:215 , GLN B:217 , HOH B:855
BINDING SITE FOR MONO-SACCHARIDE NAG B 602 BOUND TO ASN B 205
09
DC3
SOFTWARE
ASN B:241 , ALA B:244 , TRP B:384 , HOH B:820 , PHE C:70 , LYS C:485
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 241 RESIDUES 603 TO 604
10
DC6
SOFTWARE
PHE B:70 , LYS B:485 , ASN C:241 , THR C:243 , ALA C:244 , TRP C:384 , HOH C:768 , HOH C:778 , HOH C:809 , HOH C:842
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 241 RESIDUES 602 TO 603
11
DC8
SOFTWARE
SER B:201 , LEU B:206 , ASN D:205 , LEU D:212 , ALA D:214 , VAL D:215 , GLN D:217 , ARG D:278 , HOH D:715
BINDING SITE FOR MONO-SACCHARIDE NAG D 602 BOUND TO ASN D 205
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Chain B
Asymmetric Unit 1
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Asym.Unit (420 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (108 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
Biol.Unit 4 (109 KB)
Header - Biol.Unit 4
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