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4QWT
Biol. Unit 4
Info
Asym.Unit (503 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (125 KB)
Biol.Unit 3 (132 KB)
Biol.Unit 4 (127 KB)
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(1)
Title
:
ANAEROBIC CRYSTAL STRUCTURE OF DELTA413-417:GS LOX IN COMPLEX WITH ARACHIDONATE
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
17 Jul 14 (Deposition) - 24 Sep 14 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Iron Binding, Membrane-Associated, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, G. Bender, W. E. Boeglin, S. G. Bartlett, A. R. Brash, M. E. Newcomer
Crystal Structure Of A Lipoxygenase In Complex With Substrate: The Arachidonic Acid-Binding Site Of 8R-Lipoxygenase.
J. Biol. Chem. V. 289 31905 2014
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
2l: ACETATE ION (ACTl)
2m: ACETATE ION (ACTm)
2n: ACETATE ION (ACTn)
2o: ACETATE ION (ACTo)
2p: ACETATE ION (ACTp)
2q: ACETATE ION (ACTq)
2r: ACETATE ION (ACTr)
2s: ACETATE ION (ACTs)
2t: ACETATE ION (ACTt)
2u: ACETATE ION (ACTu)
2v: ACETATE ION (ACTv)
2w: ACETATE ION (ACTw)
2x: ACETATE ION (ACTx)
2y: ACETATE ION (ACTy)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
4f: CHLORIDE ION (CLf)
5a: FE (II) ION (FE2a)
5b: FE (II) ION (FE2b)
5c: FE (II) ION (FE2c)
5d: FE (II) ION (FE2d)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
-1
Ligand/Ion
ARACHIDONIC ACID
2
ACT
6
Ligand/Ion
ACETATE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
FE2
1
Ligand/Ion
FE (II) ION
6
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(15, 15)
Info
All Sites
01: DC8 (SOFTWARE)
02: EC6 (SOFTWARE)
03: FC1 (SOFTWARE)
04: FC3 (SOFTWARE)
05: FC6 (SOFTWARE)
06: FC7 (SOFTWARE)
07: FC8 (SOFTWARE)
08: FC9 (SOFTWARE)
09: GC1 (SOFTWARE)
10: GC2 (SOFTWARE)
11: GC3 (SOFTWARE)
12: GC4 (SOFTWARE)
13: GC5 (SOFTWARE)
14: GC6 (SOFTWARE)
15: GC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
DC8
SOFTWARE
GLU C:51 , HOH C:801 , HOH C:807 , HOH C:1301 , ASN D:655 , HOH D:808 , HOH D:1176
BINDING SITE FOR RESIDUE CA C 703
02
EC6
SOFTWARE
ALA C:22 , ASP C:41 , GLY C:43 , HOH C:1042 , HOH C:1282 , HOH C:1300 , ASP D:659 , GLU D:662
BINDING SITE FOR RESIDUE GOL C 710
03
FC1
SOFTWARE
ASN C:655 , HOH C:818 , GLU D:51 , HOH D:803 , HOH D:804 , HOH D:805 , HOH D:827
BINDING SITE FOR RESIDUE CA C 714
04
FC3
SOFTWARE
ASP C:659 , GLU C:662 , HOH C:1189 , HOH C:1289 , ALA D:22 , ASP D:41 , GLY D:43
BINDING SITE FOR RESIDUE GOL C 716
05
FC6
SOFTWARE
PHE D:232 , GLN D:235 , GLU D:375 , ASN D:586
BINDING SITE FOR RESIDUE ACT D 701
06
FC7
SOFTWARE
HIS D:384 , HIS D:389 , HIS D:570 , ASN D:574 , ILE D:693 , HOH D:819
BINDING SITE FOR RESIDUE FE2 D 702
07
FC8
SOFTWARE
HIS D:17 , GLY D:19 , ASP D:79 , ASP D:81 , HOH D:823
BINDING SITE FOR RESIDUE CA D 703
08
FC9
SOFTWARE
LEU D:189 , SER D:193 , THR D:196 , ALA D:618
BINDING SITE FOR RESIDUE ACT D 704
09
GC1
SOFTWARE
ASP D:205 , ALA D:223 , TRP D:226
BINDING SITE FOR RESIDUE ACT D 705
10
GC2
SOFTWARE
GLY D:503 , ALA D:507 , GLU D:553 , LYS D:556 , HOH D:900
BINDING SITE FOR RESIDUE GOL D 706
11
GC3
SOFTWARE
ALA D:117 , LYS D:411 , TRP D:645 , GLU D:646 , ASP D:647
BINDING SITE FOR RESIDUE CL D 707
12
GC4
SOFTWARE
ASN D:200 , ASP D:202 , SER D:203 , ASP D:206
BINDING SITE FOR RESIDUE GOL D 708
13
GC5
SOFTWARE
PHE D:630 , TYR D:636 , GLU D:685
BINDING SITE FOR RESIDUE ACT D 709
14
GC6
SOFTWARE
GLN D:380 , SER D:441 , ALA D:589 , ALA D:620 , VAL D:624
BINDING SITE FOR RESIDUE ACT D 710
15
GC7
SOFTWARE
GLY D:19 , THR D:20 , GLU D:46
BINDING SITE FOR RESIDUE ACT D 711
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (503 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (125 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
Biol.Unit 4 (127 KB)
Header - Biol.Unit 4
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