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4QRN
Biol. Unit 2
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Asym.Unit (780 KB)
Biol.Unit 1 (390 KB)
Biol.Unit 2 (387 KB)
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Title
:
HIGH-RESOLUTION CRYSTAL STRUCTURE OF 5-CARBOXYVANILLATE DECARBOXYLASE (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 COMPLEXED WITH MANGANESE AND 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID
Authors
:
Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, J. A. Gerlt, F. M. Rau S. C. Almo
Date
:
01 Jul 14 (Deposition) - 06 Aug 14 (Release) - 06 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.07
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hydrolase, Decarboxylase, Enzyme Function Initiative, Efi, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Carboxyvanillate Decarboxylase From Novosphingobium Aromaticivorans
To Be Published
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: 4-HYDROXY-3-METHOXY-5-NITROBENZOIC... (1DFa)
1b: 4-HYDROXY-3-METHOXY-5-NITROBENZOIC... (1DFb)
1c: 4-HYDROXY-3-METHOXY-5-NITROBENZOIC... (1DFc)
1d: 4-HYDROXY-3-METHOXY-5-NITROBENZOIC... (1DFd)
2a: ACETATE ION (ACTa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1DF
2
Ligand/Ion
4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID
2
ACT
-1
Ligand/Ion
ACETATE ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
3
Ligand/Ion
GLYCEROL
5
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(11, 11)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
GLU C:19 , HIS C:188 , ASP C:314 , 1DF C:402 , HOH C:575
BINDING SITE FOR RESIDUE MN C 401
02
BC5
SOFTWARE
GLU C:19 , TYR C:51 , ARG C:58 , THR C:90 , SER C:91 , HIS C:188 , HIS C:241 , ASP C:314 , TYR C:317 , MN C:401 , HOH C:512 , HOH C:536 , HOH C:593 , HOH C:614 , ARG D:252 , MET D:256
BINDING SITE FOR RESIDUE 1DF C 402
03
BC6
SOFTWARE
ASP C:41 , GLN C:162 , PRO C:193 , ASP C:194 , HOH C:684 , HOH C:755 , HOH C:1006
BINDING SITE FOR RESIDUE GOL C 403
04
BC7
SOFTWARE
TYR C:255 , GLN C:258 , ALA C:259 , ARG C:262 , HOH C:534 , HOH C:691 , HOH C:819 , HOH C:921
BINDING SITE FOR RESIDUE GOL C 404
05
BC8
SOFTWARE
ARG C:58 , SER D:263 , HOH D:674
BINDING SITE FOR RESIDUE CL C 405
06
BC9
SOFTWARE
GLU C:169 , ARG C:268 , HOH C:753
BINDING SITE FOR RESIDUE CL C 406
07
CC1
SOFTWARE
GLU D:19 , HIS D:188 , ASP D:314 , 1DF D:402 , HOH D:542
BINDING SITE FOR RESIDUE MN D 401
08
CC2
SOFTWARE
ARG C:252 , MET C:256 , GLU D:19 , TYR D:51 , ARG D:58 , THR D:90 , SER D:91 , HIS D:188 , HIS D:241 , ASP D:314 , TYR D:317 , MN D:401 , HOH D:509 , HOH D:545 , HOH D:582 , HOH D:610
BINDING SITE FOR RESIDUE 1DF D 402
09
CC3
SOFTWARE
ASP D:41 , GLN D:162 , PRO D:193 , ASP D:194 , HOH D:691 , HOH D:800 , HOH D:809 , HOH D:881
BINDING SITE FOR RESIDUE GOL D 403
10
CC4
SOFTWARE
TYR D:121 , PRO D:122 , ASP D:123
BINDING SITE FOR RESIDUE CL D 404
11
CC5
SOFTWARE
VAL D:179 , TYR D:232 , PRO D:233 , SER D:234
BINDING SITE FOR RESIDUE CL D 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (780 KB)
Header - Asym.Unit
Biol.Unit 1 (390 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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