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4QNK
Biol. Unit 1
Info
Asym.Unit (542 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
THE STRUCTURE OF WT A. THALIANA IGPD2 IN COMPLEX WITH MN2+ AND PHOSPHATE
Authors
:
C. Bisson, K. L. Britton, S. E. Sedelnikova, H. F. Rodgers, T. C. Eadsfor R. Viner, T. R. Hawkes, P. J. Baker, D. W. Rice
Date
:
18 Jun 14 (Deposition) - 24 Jun 15 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (3x)
Keywords
:
Hydro-Lyase, Histidine Biosynthesis, Manganese Binding, Chloroplastic, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Bisson, K. L. Britton, S. E. Sedelnikova, H. F. Rodgers, T. C. Eadsforth, R. C. Viner, T. R. Hawkes, P. J. Baker, D. W. Rice
Crystal Structures Reveal That The Reaction Mechanism Of Imidazoleglycerol-Phosphate Dehydratase Is Controlled By Switching Mn(Ii) Coordination.
Structure V. 23 1236 2015
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Hetero Components
(2, 36)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
PO4
24
Ligand/Ion
PHOSPHATE ION
[
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Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:47 , HIS A:169 , GLU A:173 , HOH A:417 , HIS D:74 , HOH D:478
BINDING SITE FOR RESIDUE MN A 301
02
AC2
SOFTWARE
HIS A:73 , GLU A:77 , HIS A:145 , HOH A:424 , HIS B:170 , HOH B:410
BINDING SITE FOR RESIDUE MN A 302
03
AC3
SOFTWARE
GLN A:51 , HIS A:55 , LYS A:177 , HOH A:551 , ARG H:99
BINDING SITE FOR RESIDUE PO4 A 303
04
AC4
SOFTWARE
GLY A:96 , SER A:189 , ASP A:190 , ARG A:193 , HOH A:479 , HOH A:548
BINDING SITE FOR RESIDUE NA A 304
05
AC5
SOFTWARE
HIS A:74 , HIS B:47 , HIS B:169 , GLU B:173 , HOH B:412 , HOH B:548
BINDING SITE FOR RESIDUE MN B 301
06
AC6
SOFTWARE
HIS B:73 , GLU B:77 , HIS B:145 , HOH B:441 , HIS C:170 , HOH C:405
BINDING SITE FOR RESIDUE MN B 302
07
AC7
SOFTWARE
GLN B:51 , HIS B:55 , ARG B:99 , LYS B:177 , HOH B:559
BINDING SITE FOR RESIDUE PO4 B 303
08
AC8
SOFTWARE
ASN B:98 , GLU B:188 , SER B:189 , HOH B:543
BINDING SITE FOR RESIDUE EDO B 304
09
AC9
SOFTWARE
GLY B:96 , SER B:189 , ASP B:190 , ARG B:193 , HOH B:487 , HOH B:556
BINDING SITE FOR RESIDUE NA B 305
10
BC1
SOFTWARE
HIS B:74 , HIS C:47 , HIS C:169 , GLU C:173 , HOH C:536 , HOH C:539
BINDING SITE FOR RESIDUE MN C 301
11
BC2
SOFTWARE
HIS C:73 , GLU C:77 , HIS C:145 , HOH C:547 , HIS D:170 , HOH D:514
BINDING SITE FOR RESIDUE MN C 302
12
BC3
SOFTWARE
ARG A:99 , GLN C:51 , HIS C:55 , LYS C:177 , HOH C:512
BINDING SITE FOR RESIDUE PO4 C 303
13
BC4
SOFTWARE
LEU C:88 , ARG C:94 , LEU C:118 , SER C:119 , GLY C:120 , SER C:154 , GLY C:155 , HOH C:563
BINDING SITE FOR RESIDUE EDO C 304
14
BC5
SOFTWARE
GLY C:96 , SER C:189 , ASP C:190 , ARG C:193 , HOH C:462 , HOH C:498
BINDING SITE FOR RESIDUE NA C 305
15
BC6
SOFTWARE
HIS A:170 , HOH A:408 , HIS D:73 , GLU D:77 , HIS D:145 , HOH D:417
BINDING SITE FOR RESIDUE MN D 301
16
BC7
SOFTWARE
HIS C:74 , HIS D:47 , HIS D:169 , GLU D:173 , HOH D:428 , HOH D:471
BINDING SITE FOR RESIDUE MN D 302
17
BC8
SOFTWARE
GLN D:51 , HIS D:55 , LYS D:177 , ARG G:99
BINDING SITE FOR RESIDUE PO4 D 303
18
BC9
SOFTWARE
GLY D:96 , SER D:189 , ASP D:190 , ARG D:193 , HOH D:520 , HOH D:532
BINDING SITE FOR RESIDUE NA D 304
19
CC1
SOFTWARE
HIS E:47 , HIS E:169 , GLU E:173 , HOH E:404 , HIS H:74 , HOH H:535
BINDING SITE FOR RESIDUE MN E 301
20
CC2
SOFTWARE
HIS E:73 , GLU E:77 , HIS E:145 , HOH E:456 , HIS F:170 , HOH F:408
BINDING SITE FOR RESIDUE MN E 302
21
CC3
SOFTWARE
ARG D:99 , GLN E:51 , HIS E:55 , LYS E:177 , HOH E:560 , HOH E:561
BINDING SITE FOR RESIDUE PO4 E 303
22
CC4
SOFTWARE
LEU E:88 , LEU E:118 , SER E:119 , GLY E:120 , SER E:154 , GLY E:155
BINDING SITE FOR RESIDUE EDO E 304
23
CC5
SOFTWARE
GLY E:96 , SER E:189 , ASP E:190 , ARG E:193 , HOH E:405 , HOH E:500
BINDING SITE FOR RESIDUE NA E 305
24
CC6
SOFTWARE
HIS E:74 , HIS F:47 , HIS F:169 , GLU F:173 , HOH F:429 , HOH F:469
BINDING SITE FOR RESIDUE MN F 301
25
CC7
SOFTWARE
HIS F:73 , GLU F:77 , HIS F:145 , HOH F:428 , HIS G:170 , HOH G:405
BINDING SITE FOR RESIDUE MN F 302
26
CC8
SOFTWARE
GLN F:51 , HIS F:55 , ARG F:99 , LYS F:177 , HOH F:509 , HOH F:548
BINDING SITE FOR RESIDUE PO4 F 303
27
CC9
SOFTWARE
GLY F:96 , SER F:189 , ASP F:190 , ARG F:193 , HOH F:540 , HOH F:546
BINDING SITE FOR RESIDUE NA F 304
28
DC1
SOFTWARE
HIS F:74 , HIS G:47 , HIS G:169 , GLU G:173 , HOH G:404 , HOH G:539
BINDING SITE FOR RESIDUE MN G 301
29
DC2
SOFTWARE
HIS G:73 , GLU G:77 , HIS G:145 , HOH G:424 , HIS H:170 , HOH H:418
BINDING SITE FOR RESIDUE MN G 302
30
DC3
SOFTWARE
ARG E:99 , GLN G:51 , HIS G:55 , LYS G:177 , HOH G:506
BINDING SITE FOR RESIDUE PO4 G 303
31
DC4
SOFTWARE
LEU G:88 , LEU G:118 , SER G:119 , GLY G:120 , SER G:154 , GLY G:155
BINDING SITE FOR RESIDUE EDO G 304
32
DC5
SOFTWARE
GLY G:96 , SER G:189 , ASP G:190 , ARG G:193 , HOH G:525 , HOH G:538
BINDING SITE FOR RESIDUE NA G 305
33
DC6
SOFTWARE
HIS E:170 , HOH E:422 , HIS H:73 , GLU H:77 , HIS H:145 , HOH H:429
BINDING SITE FOR RESIDUE MN H 301
34
DC7
SOFTWARE
HIS G:74 , HIS H:47 , HIS H:169 , GLU H:173 , HOH H:420 , HOH H:491
BINDING SITE FOR RESIDUE MN H 302
35
DC8
SOFTWARE
ARG C:99 , GLN H:51 , HIS H:55 , LYS H:177 , HOH H:507
BINDING SITE FOR RESIDUE PO4 H 303
36
DC9
SOFTWARE
GLY H:96 , SER H:189 , ASP H:190 , ARG H:193 , HOH H:504 , HOH H:531
BINDING SITE FOR RESIDUE NA H 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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