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4QN9
Asym. Unit
Info
Asym.Unit (263 KB)
Biol.Unit 1 (251 KB)
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(1)
Title
:
STRUCTURE OF HUMAN NAPE-PLD
Authors
:
G. Garau
Date
:
17 Jun 14 (Deposition) - 17 Jun 15 (Release) - 17 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pld, Nape, Anandamide, Bile Acid, Phospholipase, Inflammation, Pain, Complex, Nae, Aea, Oea, Pea, Mbl, Pe, Cannabinoid, Fat, Acyl, Deoxycholate, Obesity, Phospholipid, Membrane, Steroid, Drug, Alpha- Beta-Beta-Alpha Fold, Phosphodiesterase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Magotti, I. Bauer, M. Igarashi, M. Babagoli, R. Marotta, D. Piomelli, G. Garau
Structure Of Human N-Acylphosphatidylethanolamine-Hydrolyzing Phospholipase D: Regulation Of Fatty Acid Ethanolamide Biosynthesis By Bile Acids.
Structure V. 23 598 2015
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEa)
1b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEb)
2a: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCa)
2b: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCb)
2c: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCc)
2d: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCd)
2e: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCe)
2f: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCf)
2g: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCg)
2h: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCh)
2i: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCi)
2j: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCj)
2k: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCk)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PE
2
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2
DXC
11
Ligand/Ion
(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:185 , HIS A:187 , HIS A:253 , ASP A:284 , ZN A:502 , 3PE A:503
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:189 , HIS A:190 , ASP A:284 , HIS A:343 , ZN A:501 , 3PE A:503
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
ALA A:154 , PRO A:156 , HIS A:187 , TYR A:188 , ASP A:189 , HIS A:253 , TRP A:254 , LYS A:256 , ARG A:257 , ASP A:284 , MET A:317 , GLN A:320 , HIS A:321 , HIS A:343 , ZN A:501 , ZN A:502 , DXC A:507 , 3PE B:606
BINDING SITE FOR RESIDUE 3PE A 503
04
AC4
SOFTWARE
TYR A:193 , TRP A:218 , LYS A:221 , CYS A:222 , TYR B:159 , MET B:160 , DXC B:602 , DXC B:607 , DXC B:610
BINDING SITE FOR RESIDUE DXC A 504
05
AC5
SOFTWARE
TYR A:159 , MET A:160 , DXC A:506 , HOH A:623 , TYR B:193 , TRP B:218 , LYS B:221 , CYS B:222 , HOH B:701
BINDING SITE FOR RESIDUE DXC A 505
06
AC6
SOFTWARE
DXC A:505 , MET B:260 , DXC B:603
BINDING SITE FOR RESIDUE DXC A 506
07
AC7
SOFTWARE
THR A:258 , LEU A:259 , 3PE A:503 , DXC B:602 , DXC B:607
BINDING SITE FOR RESIDUE DXC A 507
08
AC8
SOFTWARE
ARG A:166 , ARG A:167 , SER B:173 , HOH B:736
BINDING SITE FOR RESIDUE SO4 A 508
09
AC9
SOFTWARE
SER A:152 , HOH A:617 , SER B:151 , SER B:152
BINDING SITE FOR RESIDUE SO4 A 509
10
BC1
SOFTWARE
TYR A:159 , HOH A:614 , TYR B:188 , TRP B:218 , ARG B:257 , DXC B:603 , HOH B:740
BINDING SITE FOR RESIDUE DXC B 601
11
BC2
SOFTWARE
MET A:260 , DXC A:504 , DXC A:507 , HOH B:743 , HOH B:748
BINDING SITE FOR RESIDUE DXC B 602
12
BC3
SOFTWARE
DXC A:506 , THR B:258 , LEU B:259 , DXC B:601 , 3PE B:606
BINDING SITE FOR RESIDUE DXC B 603
13
BC4
SOFTWARE
HIS B:185 , HIS B:187 , HIS B:253 , ASP B:284 , ZN B:605 , 3PE B:606
BINDING SITE FOR RESIDUE ZN B 604
14
BC5
SOFTWARE
ASP B:189 , HIS B:190 , ASP B:284 , HIS B:343 , ZN B:604 , 3PE B:606
BINDING SITE FOR RESIDUE ZN B 605
15
BC6
SOFTWARE
3PE A:503 , ALA B:154 , PRO B:156 , HIS B:187 , TYR B:188 , ASP B:189 , HIS B:253 , TRP B:254 , LYS B:256 , ARG B:257 , ASP B:284 , MET B:317 , GLN B:320 , HIS B:321 , HIS B:343 , DXC B:603 , ZN B:604 , ZN B:605
BINDING SITE FOR RESIDUE 3PE B 606
16
BC7
SOFTWARE
TYR A:188 , TRP A:218 , ARG A:257 , DXC A:504 , DXC A:507 , TYR B:159 , HOH B:721 , HOH B:740
BINDING SITE FOR RESIDUE DXC B 607
17
BC8
SOFTWARE
LEU A:259 , LYS B:256 , LEU B:259 , MET B:260 , DXC B:609
BINDING SITE FOR RESIDUE DXC B 608
18
BC9
SOFTWARE
LYS A:256 , LEU A:259 , MET A:260 , LEU B:259 , DXC B:608 , DXC B:610
BINDING SITE FOR RESIDUE DXC B 609
19
CC1
SOFTWARE
DXC A:504 , GLY B:161 , PRO B:162 , ALA B:348 , DXC B:609
BINDING SITE FOR RESIDUE DXC B 610
20
CC2
SOFTWARE
THR A:171 , SER A:173 , HOH A:611 , ARG B:166 , ARG B:167
BINDING SITE FOR RESIDUE SO4 B 611
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (263 KB)
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