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Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN IN COMPLEX WITH THE TNF23 RNA DUPLEX
Authors
:
D. Tan, L. Tong
Date
:
31 May 14 (Deposition) - 16 Jul 14 (Release) - 20 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Rna Duplex, Winged-Helix Motif, Mrna Secondary Structure, Mrna Decay, Immune Responses, Autoimmunity, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Tan, M. Zhou, M. Kiledjian, L. Tong
The Roq Domain Of Roquin Recognizes Mrna Constitutive-Decay Element And Double-Stranded Rna.
Nat. Struct. Mol. Biol. V. 21 679 2014
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
2a: GLYCEROL (GOLa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
14
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:184 , ARG A:188 , PHE A:194 , HOH A:773
BINDING SITE FOR RESIDUE CL A 501
02
AC2
SOFTWARE
GLY A:196 , PRO A:197 , ALA A:198 , MSE A:199 , HOH A:742
BINDING SITE FOR RESIDUE CL A 502
03
AC3
SOFTWARE
GLN A:144 , GLY A:150 , ARG A:153 , HOH A:911
BINDING SITE FOR RESIDUE CL A 503
04
AC4
SOFTWARE
TYR A:96 , LYS A:100 , LEU A:145 , THR B:93
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
SER A:305 , ASP A:310 , GLN A:311
BINDING SITE FOR RESIDUE CL A 505
06
AC6
SOFTWARE
ASN A:175 , HOH A:659 , HOH A:918
BINDING SITE FOR RESIDUE CL A 506
07
AC7
SOFTWARE
SER A:312 , LYS A:314 , SER A:315
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
ALA A:186 , ARG A:190 , HOH A:676 , HOH A:770 , HOH B:681
BINDING SITE FOR RESIDUE CL A 508
09
AC9
SOFTWARE
ARG B:188 , PHE B:194
BINDING SITE FOR RESIDUE CL B 501
10
BC1
SOFTWARE
GLU A:148 , ARG A:151 , HOH A:855 , GLU B:147 , GLU B:148 , ARG B:151
BINDING SITE FOR RESIDUE CL B 502
11
BC2
SOFTWARE
GLN B:144 , GLY B:150 , ARG B:153 , HOH B:911
BINDING SITE FOR RESIDUE CL B 503
12
BC3
SOFTWARE
LYS B:256 , LYS B:270 , GLU B:271
BINDING SITE FOR RESIDUE CL B 504
13
BC4
SOFTWARE
HOH A:697 , ALA B:186 , ARG B:190 , HOH B:682
BINDING SITE FOR RESIDUE CL B 505
14
BC5
SOFTWARE
ARG B:233 , PHE B:234 , HOH B:963
BINDING SITE FOR RESIDUE CL B 506
15
BC6
SOFTWARE
MSE B:155 , ARG B:156 , ILE B:363 , ASP B:364 , GLN B:376 , HOH B:725 , HOH B:881
BINDING SITE FOR RESIDUE GOL B 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (131 KB)
Header - Biol.Unit 3
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