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4QG4
Asym. Unit
Info
Asym.Unit (355 KB)
Biol.Unit 1 (344 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TETRAMERIC GTP/DATP/ATP-BOUND SAMHD1 (H210A) MUTANT CATALYTIC CORE
Authors
:
L. M. I. Koharudin, Y. Wu, M. Delucia, J. Mehrens, A. M. Gronenborn, J. Ah
Date
:
22 May 14 (Deposition) - 15 Oct 14 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Deoxynucleoside Triphosphate Triphosphohydrolase, 2'-Deoxyadenosine- 5'-Triphosphate, Guanosine-5'-Triphosphate, Hiv Restriction Factor, Dntpase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Koharudin, Y. Wu, M. Delucia, J. Mehrens, A. M. Gronenborn, J. Ahn
Structural Basis Of Allosteric Activation Of Sterile Alpha Motif And Histidine-Aspartate Domain-Containing Protein 1 (Samhd1) By Nucleoside Triphosphates.
J. Biol. Chem. V. 289 32617 2014
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPa)
1b: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPb)
1c: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPc)
1d: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPd)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTP
4
Ligand/Ion
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2
GTP
4
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:155 , VAL A:156 , VAL A:378 , ARG A:451 , LYS A:455 , HOH A:857 , LYS C:523 , DTP C:701 , LYS D:116 , VAL D:117 , ILE D:118 , ASP D:137 , GLN D:142 , ARG D:145 , PHE D:165 , MG D:702 , HOH D:816
BINDING SITE FOR RESIDUE GTP A 701
02
AC2
SOFTWARE
ARG A:333 , PHE A:337 , ARG A:352 , LYS A:354 , ASN A:358 , LYS A:523 , HOH A:830 , VAL B:117 , ASN B:119 , GTP B:702 , MG B:704 , VAL C:156 , PHE C:157 , ARG C:372 , HIS C:376 , LYS C:377 , VAL C:378
BINDING SITE FOR RESIDUE DTP A 702
03
AC3
SOFTWARE
LYS A:116 , VAL A:117 , ILE A:118 , ASP A:137 , GLN A:142 , ARG A:145 , PHE A:165 , MG A:704 , HOH A:804 , HOH A:832 , HOH A:873 , LYS B:523 , DTP B:703 , HOH B:906 , TYR D:155 , VAL D:156 , VAL D:378 , ARG D:451 , LYS D:455 , HOH D:875
BINDING SITE FOR RESIDUE GTP A 703
04
AC4
SOFTWARE
GTP A:703 , DTP B:703
BINDING SITE FOR RESIDUE MG A 704
05
AC5
SOFTWARE
HIS A:167 , HIS A:206 , ASP A:207 , ASP A:311 , HOH A:898
BINDING SITE FOR RESIDUE ZN A 705
06
AC6
SOFTWARE
TYR B:155 , VAL B:156 , VAL B:378 , ARG B:451 , LYS B:455 , HOH B:824 , HOH B:922 , HOH B:933 , HOH B:963 , LYS C:116 , VAL C:117 , ILE C:118 , ILE C:136 , ASP C:137 , GLN C:142 , ARG C:145 , PHE C:165 , MG C:702 , HOH C:822 , LYS D:523 , DTP D:701
BINDING SITE FOR RESIDUE GTP B 701
07
AC7
SOFTWARE
LYS A:523 , DTP A:702 , LYS B:116 , VAL B:117 , ILE B:118 , ASP B:137 , GLN B:142 , ARG B:145 , PHE B:165 , MG B:704 , HOH B:826 , HOH B:873 , HOH B:938 , HOH B:943 , HOH B:944 , TYR C:155 , VAL C:156 , VAL C:378 , ARG C:451 , LYS C:455
BINDING SITE FOR RESIDUE GTP B 702
08
AC8
SOFTWARE
VAL A:117 , ASN A:119 , GTP A:703 , MG A:704 , ARG B:333 , PHE B:337 , ARG B:352 , LYS B:354 , ASN B:358 , LYS B:523 , HOH B:829 , HOH B:840 , HOH B:855 , HOH B:868 , HOH B:879 , VAL D:156 , PHE D:157 , ARG D:372 , HIS D:376 , LYS D:377
BINDING SITE FOR RESIDUE DTP B 703
09
AC9
SOFTWARE
DTP A:702 , LYS B:116 , GTP B:702
BINDING SITE FOR RESIDUE MG B 704
10
BC1
SOFTWARE
HIS B:167 , HIS B:206 , ASP B:207 , ASP B:311
BINDING SITE FOR RESIDUE ZN B 705
11
BC2
SOFTWARE
VAL A:156 , PHE A:157 , ILE A:325 , ARG A:372 , HIS A:376 , LYS A:377 , VAL A:378 , GTP A:701 , ARG C:333 , PHE C:337 , ARG C:352 , LYS C:354 , ASN C:358 , LYS C:523 , HOH C:813 , HOH C:825 , HOH C:904 , VAL D:117 , ASN D:119 , MG D:702
BINDING SITE FOR RESIDUE DTP C 701
12
BC3
SOFTWARE
GTP B:701 , HOH B:922 , LYS C:116 , HOH C:822 , DTP D:701
BINDING SITE FOR RESIDUE MG C 702
13
BC4
SOFTWARE
HIS C:167 , HIS C:206 , ASP C:207 , ASP C:311 , HOH C:884
BINDING SITE FOR RESIDUE ZN C 703
14
BC5
SOFTWARE
VAL B:156 , PHE B:157 , ARG B:372 , HIS B:376 , LYS B:377 , VAL B:378 , GTP B:701 , HOH B:922 , HOH B:929 , VAL C:117 , ILE C:118 , ASN C:119 , MG C:702 , ARG D:333 , PHE D:337 , ARG D:352 , LYS D:354 , ASN D:358 , LYS D:523 , HOH D:827 , HOH D:852 , HOH D:892
BINDING SITE FOR RESIDUE DTP D 701
15
BC6
SOFTWARE
GTP A:701 , DTP C:701 , LYS D:116 , HOH D:816
BINDING SITE FOR RESIDUE MG D 702
16
BC7
SOFTWARE
HIS D:167 , HIS D:206 , ASP D:207 , ASP D:311
BINDING SITE FOR RESIDUE ZN D 703
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (355 KB)
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